# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 1.46e-63 a.104.1.1 107238 2fdvA 476 2.68e-63 1po5A 476 2.81e-63 a.104.1.1 94963 3c6gA 479 3.63e-63 2hi4A 495 1.06e-62 3b98A 475 3.34e-62 1x8vA 455 3.65e-62 a.104.1.1 114968 1r9oA 477 6.97e-62 a.104.1.1 104878 3b6hA 498 7.76e-62 1h5zA 455 8.43e-62 a.104.1.1 90622 2ve3A 444 1.67e-61 1zo4A 473 2.62e-61 1jpzA 473 3.73e-61 a.104.1.1 67069 2cibA 455 2.86e-60 2ij2A 470 1.92e-59 a.104.1.1 137449 2iagA 482 3.39e-59 2zbxA 412 4.34e-53 1izoA 417 2.68e-52 a.104.1.1 83851 1gwiA 411 4.41e-52 a.104.1.1 76364 3bujA 397 4.90e-52 1z8oA 404 1.04e-51 a.104.1.1 124722 1jfbA 404 1.31e-51 a.104.1.1 66624 1yrcA 414 1.50e-51 a.104.1.1 123917 3bdzA 397 2.18e-51 1s1fA 406 3.63e-51 a.104.1.1 112008 1uedA 406 3.72e-51 a.104.1.1 99256 1t2bA 397 6.90e-51 1q5dA 419 9.30e-51 a.104.1.1 95891 2fr7A 412 1.19e-50 1cptA 428 2.11e-50 a.104.1.1 18968 1cpt 412 2.90e-50 1n97A 389 3.33e-50 a.104.1.1 80335 1n40A 396 7.34e-50 a.104.1.1 79977 2uuqA 414 2.48e-49 2z3tA 425 3.78e-49 1odoA 408 1.29e-48 a.104.1.1 92783 1lfkA 398 7.12e-48 a.104.1.1 77926 2rfbA 343 1.27e-46 1io7A 368 1.37e-43 a.104.1.1 18971 2dvtA 327 2.108 c.1.9.15 131793 1nd6A 354 3.705 c.60.1.2 80407 2hhcA 330 5.005 2scpA 174 5.461 a.39.1.5 17256 2basA 431 10.02 c.1.33.1,d.110.6.2 128244,128245 2pq6A 482 12.23 1h7eA 245 15.45 c.68.1.13 60717 2rghA 571 17.15 1w7jB 151 18.87 a.39.1.5 120690 1cjcA 460 23.12 c.3.1.1,c.4.1.1 30319,30604 2nx9A 464 25.36 2go9A 161 25.81 1pjrA 724 25.99 c.37.1.19,c.37.1.19 32391,32392 1wy2A 351 26.10 1dceB 331 26.18 a.102.4.3 18872 2q83A 346 26.27 2ovkC 159 27.81 1r5lA 262 28.87 a.5.3.1,c.13.1.1 97099,97100 2qzvA 873 29.73 2db0A 253 30.49 1tn6B 437 30.50 a.102.4.3 112528 1a9nB 96 31.88 d.58.7.1 39165 2e8yA 718 34.37 2hm7A 310 34.49 1sxjE 354 34.57 a.80.1.1,c.37.1.20 106089,106090 2qt1A 207 36.79 2p36A 335 37.18 2ixaA 444 38.57 1qqfA 277 39.33 a.102.4.4 18875 1zjcA 418 40.53 e.60.1.1 125147 2f9dA 125 40.62 d.58.7.1 133159 2q4uA 272 41.74 1khvA 516 41.88 e.8.1.4 68627 1qhxA 178 43.03 c.37.1.3 31936 1dosA 358 44.18 c.1.10.2 29175 2pv7A 298 45.21 1t5jA 313 46.30 a.209.1.1 99125 1vicA 262 46.72 c.68.1.13 100756 1dqaA 467 48.92 d.58.20.1,d.179.1.1 39364,42585 2jg2A 422 49.20 2nsaA 170 49.51 2nooA 502 49.69 1is1A 185 50.85 d.67.3.1 83704 2di4A 238 50.90 a.269.1.1 131522 1umpA 631 51.50 a.102.4.2,a.102.4.2 99619,99620 2b4uA 335 51.97 2o7rA 338 52.58 2dyuA 334 52.76 1nvmA 345 52.83 a.5.7.1,c.1.10.5 86249,86250 1wn1A 356 53.39 1k0mA 241 54.76 a.45.1.1,c.47.1.5 67949,67950 1smdA 496 55.77 b.71.1.1,c.1.8.1 27768,28755 1ni4A 365 56.29 c.36.1.11 85728 2i8aA 252 56.92 1e1oA 504 58.88 b.40.4.1,d.104.1.1 25258,40714 2nwfA 141 59.07 1wzlA 585 59.24 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1sxjC 340 59.31 a.80.1.1,c.37.1.20 106085,106086 2ph7A 246 60.58 2e5iA 124 62.01 2qahA 303 62.60 5csmA 256 62.79 a.130.1.2 19494 2yvuA 186 64.88 1lzlA 323 64.97 c.69.1.2 78306 1uhkA 191 65.41 a.39.1.5 119681 1qwjA 229 65.95 c.68.1.13 96478 2ve7C 250 66.42 1z90A 469 67.46 b.81.1.4,c.68.1.5 124732,124733 2opoA 86 68.05 a.39.1.10 139209 3clqA 421 68.52 1kwgA 645 68.61 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2sqcA 631 68.96 a.102.4.2,a.102.4.2 18854,18855 2id3A 225 72.29 a.4.1.9,a.121.1.1 137261,137262 2i76A 276 72.47 2ejaA 338 73.31 1chmA 401 74.97 c.55.2.1,d.127.1.1 33545,41142 1yzxA 226 75.97 1twfA 1733 76.04 e.29.1.2 112725 2r4vA 247 76.67 2o7iA 592 77.95 1lrvA 244 79.39 a.118.1.5 19146 2uxyA 341 80.17 1z45A 699 80.31 b.30.5.4,c.2.1.2 124427,124428 1b5pA 385 80.33 c.67.1.1 90403 2ggoA 401 80.51 1oyzA 280 80.90 a.118.1.16 93775 2fp3A 316 81.11 2nq5A 755 82.02 2dhxA 104 82.41 2qk2A 242 82.59 1hzfA 367 82.69 a.102.4.4 76731 1fxoA 293 82.80 c.68.1.6 34524 2ct9A 208 83.41 2fepA 289 83.67 1l6sA 323 84.57 c.1.10.3 73627 2g3bA 208 85.00 a.4.1.9,a.121.1.1 134558,134559 1z5hA 780 85.07 2q0tA 263 86.34 2dfwA 396 87.17 2ojpA 292 87.20 3cbuA 214 87.25 1cznA 169 87.34 c.23.5.1 31181 2ff4A 388 87.65 a.4.6.1,a.118.8.3,b.26.1.2 133367,133368,133369 1nu4A 97 89.28 d.58.7.1 80731 2zcmA 192 89.85