# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 8.33e-60 3c6gA 479 9.84e-60 1tqnA 486 1.34e-59 a.104.1.1 107238 1po5A 476 1.36e-59 a.104.1.1 94963 2hi4A 495 2.88e-59 1x8vA 455 1.40e-58 a.104.1.1 114968 1r9oA 477 2.15e-58 a.104.1.1 104878 3b6hA 498 2.98e-58 3b98A 475 3.32e-58 1h5zA 455 4.00e-58 a.104.1.1 90622 2ve3A 444 5.60e-58 1zo4A 473 1.23e-57 1jpzA 473 1.36e-57 a.104.1.1 67069 2cibA 455 5.01e-57 2ij2A 470 5.50e-56 a.104.1.1 137449 2iagA 482 9.69e-56 2zbxA 412 2.18e-50 1izoA 417 3.23e-49 a.104.1.1 83851 1gwiA 411 3.82e-49 a.104.1.1 76364 1z8oA 404 5.21e-49 a.104.1.1 124722 1yrcA 414 9.21e-49 a.104.1.1 123917 1jfbA 404 1.05e-48 a.104.1.1 66624 3bdzA 397 1.14e-48 3bujA 397 1.15e-48 1s1fA 406 3.50e-48 a.104.1.1 112008 1t2bA 397 3.86e-48 1uedA 406 4.01e-48 a.104.1.1 99256 1q5dA 419 7.71e-48 a.104.1.1 95891 1cptA 428 1.17e-47 a.104.1.1 18968 1cpt 412 1.70e-47 2fr7A 412 2.00e-47 1n40A 396 2.35e-47 a.104.1.1 79977 1n97A 389 3.72e-47 a.104.1.1 80335 2uuqA 414 4.66e-47 2z3tA 425 1.94e-46 1odoA 408 5.93e-46 a.104.1.1 92783 1lfkA 398 9.53e-45 a.104.1.1 77926 2rfbA 343 4.39e-44 1io7A 368 9.95e-42 a.104.1.1 18971 1nd6A 354 3.244 c.60.1.2 80407 2dvtA 327 3.331 c.1.9.15 131793 2hhcA 330 4.424 2nx9A 464 6.174 2pq6A 482 6.537 2scpA 174 6.612 a.39.1.5 17256 1pjrA 724 9.96 c.37.1.19,c.37.1.19 32391,32392 2rghA 571 12.98 2e8yA 718 13.08 1w7jB 151 14.02 a.39.1.5 120690 1dceB 331 15.78 a.102.4.3 18872 1h7eA 245 17.13 c.68.1.13 60717 2f9dA 125 17.39 d.58.7.1 133159 2db0A 253 17.43 1a9nB 96 18.09 d.58.7.1 39165 2basA 431 21.13 c.1.33.1,d.110.6.2 128244,128245 2q83A 346 21.40 1tn6B 437 22.27 a.102.4.3 112528 2fp3A 316 22.60 2e5iA 124 23.40 1vicA 262 25.23 c.68.1.13 100756 2ovkC 159 25.37 1cjcA 460 28.04 c.3.1.1,c.4.1.1 30319,30604 2qt1A 207 28.46 2go9A 161 30.54 1t5jA 313 31.04 a.209.1.1 99125 2b4uA 335 33.64 1sxjC 340 33.80 a.80.1.1,c.37.1.20 106085,106086 2dhxA 104 34.73 1lrvA 244 36.35 a.118.1.5 19146 1wn1A 356 38.88 1uhkA 191 39.23 a.39.1.5 119681 2o7iA 592 39.64 2hm7A 310 42.35 2qzvA 873 43.82 1r5lA 262 46.05 a.5.3.1,c.13.1.1 97099,97100 1is1A 185 46.31 d.67.3.1 83704 1sxjE 354 47.75 a.80.1.1,c.37.1.20 106089,106090 2b9wA 424 48.21 1xo1A 291 49.34 a.60.7.1,c.120.1.2 18086,33356 2b61A 377 49.46 2qahA 303 49.80 2nwfA 141 50.64 1kwgA 645 51.69 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1qqfA 277 51.89 a.102.4.4 18875 1wy2A 351 52.60 1ni4A 365 52.90 c.36.1.11 85728 2ixaA 444 54.06 1qwjA 229 56.99 c.68.1.13 96478 1umpA 631 57.65 a.102.4.2,a.102.4.2 99619,99620 1z5hA 780 59.45 1v0jA 399 60.50 1pjr 724 60.79 2prrA 197 61.47 2ditA 112 61.56 d.58.7.1 131533 1dqaA 467 61.83 d.58.20.1,d.179.1.1 39364,42585 2yvuA 186 61.84 1wdpA 495 61.95 c.1.8.1 120907 1nu4A 97 63.03 d.58.7.1 80731 2ve7C 250 63.41 2ghpA 292 65.22 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1k0mA 241 67.61 a.45.1.1,c.47.1.5 67949,67950 2r4vA 247 68.33 1wqgA 185 68.39 2nooA 502 68.71 1hzfA 367 69.52 a.102.4.4 76731 1rwyA 109 69.64 a.39.1.4 98002 1wzlA 585 69.86 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2ph7A 246 73.37 2di4A 238 73.45 a.269.1.1 131522 1dosA 358 75.31 c.1.10.2 29175 2gicA 422 75.65 a.260.1.1 135227 2qh5A 308 75.73 2aaaA 484 75.90 b.71.1.1,c.1.8.1 27777,28764 1smdA 496 75.97 b.71.1.1,c.1.8.1 27768,28755 2r44A 331 76.47 1wdcB 156 76.56 a.39.1.5 17302 1jpaA 312 77.04 d.144.1.7 67011 1lucB 324 77.40 c.1.16.1 29548 1lzlA 323 78.03 c.69.1.2 78306 1l3kA 196 78.49 d.58.7.1,d.58.7.1 73539,73540 1ee4A 423 79.18 a.118.1.1 19128 1wzaA 488 79.26 b.71.1.1,c.1.8.1 121489,121490 2ct9A 208 79.89 1t5oA 351 81.46 c.124.1.5 106459 1z90A 469 82.94 b.81.1.4,c.68.1.5 124732,124733 1xqrA 296 83.86 a.118.1.21 122241 1oaoA 674 84.25 e.26.1.2 86744 1qhxA 178 86.62 c.37.1.3 31936 1zjcA 418 87.02 e.60.1.1 125147 2f7tA 227 87.08 2ojpA 292 88.00 1twfA 1733 89.34 e.29.1.2 112725 1w6kA 732 89.64 a.102.4.2,a.102.4.2 114271,114272