# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3c6gA 479 1.11e-61 1po5A 476 2.74e-61 a.104.1.1 94963 2fdvA 476 3.40e-61 2hi4A 495 4.25e-61 1tqnA 486 5.17e-61 a.104.1.1 107238 3b6hA 498 1.38e-60 3b98A 475 1.86e-60 1r9oA 477 6.88e-60 a.104.1.1 104878 2ve3A 444 9.93e-60 1x8vA 455 1.17e-59 a.104.1.1 114968 1zo4A 473 1.46e-59 1h5zA 455 3.10e-59 a.104.1.1 90622 1jpzA 473 3.97e-59 a.104.1.1 67069 2iagA 482 1.30e-58 2cibA 455 7.34e-58 2ij2A 470 1.03e-57 a.104.1.1 137449 2zbxA 412 4.61e-51 1izoA 417 2.01e-50 a.104.1.1 83851 1gwiA 411 2.39e-50 a.104.1.1 76364 1yrcA 414 4.16e-50 a.104.1.1 123917 1uedA 406 1.30e-49 a.104.1.1 99256 3bujA 397 1.88e-49 1z8oA 404 2.05e-49 a.104.1.1 124722 1jfbA 404 2.08e-49 a.104.1.1 66624 3bdzA 397 2.58e-49 1s1fA 406 3.65e-49 a.104.1.1 112008 1t2bA 397 4.94e-49 1n97A 389 1.43e-48 a.104.1.1 80335 1q5dA 419 1.59e-48 a.104.1.1 95891 1cpt 412 2.36e-48 1cptA 428 2.49e-48 a.104.1.1 18968 2fr7A 412 2.58e-48 1n40A 396 1.44e-47 a.104.1.1 79977 2uuqA 414 1.91e-47 2z3tA 425 4.08e-47 1odoA 408 4.33e-47 a.104.1.1 92783 1lfkA 398 3.08e-46 a.104.1.1 77926 2rfbA 343 6.47e-45 1io7A 368 9.46e-42 a.104.1.1 18971 1pjrA 724 3.842 c.37.1.19,c.37.1.19 32391,32392 2dvtA 327 4.237 c.1.9.15 131793 2pq6A 482 4.487 1wy2A 351 4.530 2hhcA 330 6.167 1nd6A 354 7.808 c.60.1.2 80407 2nx9A 464 9.084 2ovkC 159 10.46 1wn1A 356 13.21 1dosA 358 16.37 c.1.10.2 29175 2rghA 571 16.41 2f9dA 125 17.51 d.58.7.1 133159 2qt1A 207 17.54 1th0A 226 19.32 d.3.1.7 106903 2ixaA 444 21.89 1w7jB 151 22.10 a.39.1.5 120690 1wdpA 495 23.39 c.1.8.1 120907 1r5lA 262 23.66 a.5.3.1,c.13.1.1 97099,97100 2scpA 174 24.54 a.39.1.5 17256 1chmA 401 24.87 c.55.2.1,d.127.1.1 33545,41142 1t5jA 313 25.22 a.209.1.1 99125 2i7gA 376 25.86 1h5rA 293 26.65 c.68.1.6 65623 2yvuA 186 26.85 2hpkA 208 27.11 2basA 431 27.32 c.1.33.1,d.110.6.2 128244,128245 1is1A 185 28.06 d.67.3.1 83704 1smdA 496 28.39 b.71.1.1,c.1.8.1 27768,28755 2is6A 680 29.32 1khvA 516 29.69 e.8.1.4 68627 1oaoA 674 30.75 e.26.1.2 86744 1wdcB 156 31.34 a.39.1.5 17302 2o7iA 592 32.02 1fxoA 293 32.10 c.68.1.6 34524 1pjr 724 33.51 3c86A 328 33.92 2ghpA 292 38.24 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1a9nB 96 38.64 d.58.7.1 39165 1kwgA 645 38.70 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1zjcA 418 40.53 e.60.1.1 125147 2ccmA 191 41.16 1uhkA 191 42.85 a.39.1.5 119681 1tn6B 437 44.03 a.102.4.3 112528 2bwvA 440 44.72 c.55.2.1,d.127.1.1 129387,129388 2ph7A 246 48.34 2db0A 253 48.82 2e6fA 314 49.39 1ra6A 461 49.40 e.8.1.4 104879 2b61A 377 49.43 1jtvA 327 50.01 c.2.1.2 84230 1qhxA 178 50.96 c.37.1.3 31936 2oyoA 196 52.36 1wkyA 464 52.88 b.18.1.31,c.1.8.3 120992,120993 1sxjE 354 53.98 a.80.1.1,c.37.1.20 106089,106090 1wzlA 585 54.03 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2di4A 238 54.19 a.269.1.1 131522 2r4vA 247 54.90 1nt4A 391 55.88 c.60.1.2 92102 1wqgA 185 56.23 1i2cA 404 56.35 c.2.1.2 83666 1umpA 631 57.18 a.102.4.2,a.102.4.2 99619,99620 2c1xA 456 57.66 2dpyA 438 59.97 1r26A 125 60.08 c.47.1.1 96847 1aua 296 60.75 2fnuA 375 61.52 c.67.1.4 133831 2pfxA 191 61.86 2ffiA 288 63.34 c.1.9.15 133385 1k0mA 241 63.89 a.45.1.1,c.47.1.5 67949,67950 2fozA 347 64.35 1x6vA 630 64.54 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1dceB 331 66.18 a.102.4.3 18872 2h00A 254 66.46 c.66.1.54 135925 2ckwA 515 68.30 1w6kA 732 68.60 a.102.4.2,a.102.4.2 114271,114272 2ay1A 394 68.84 c.67.1.1 34357 1l9xA 315 69.51 c.23.16.1 73762 2nwfA 141 72.58 1uc8A 280 73.73 c.30.1.6,d.142.1.7 99165,99166 1iseA 185 73.92 d.67.3.1 90691 1h7eA 245 74.77 c.68.1.13 60717 2ve7C 250 74.90 2ct9A 208 75.90 1lucA 355 77.54 c.1.16.1 29547 1b5pA 385 77.78 c.67.1.1 90403 1oywA 523 77.89 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1w36B 1180 77.92 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1rrvA 416 78.10 c.87.1.5 105083 1l3kA 196 78.36 d.58.7.1,d.58.7.1 73539,73540 2gwdA 449 79.92 1nu4A 97 80.74 d.58.7.1 80731 1w9yA 319 81.06 b.82.2.1 120801 1auiB 169 81.22 a.39.1.5 17325 2f7tA 227 81.82 2z9wA 392 82.70 1h6dA 433 83.75 c.2.1.3,d.81.1.5 65656,65657 1omrA 201 83.76 a.39.1.5 93349 1a0dA 440 83.81 c.1.15.3 29533 2e5iA 124 83.95 2go9A 161 84.11 1i1qA 520 84.26 d.161.1.1 61543 2r40D 266 84.76 2gwgA 350 85.12 c.1.9.15 135805 1uhnA 189 85.74 a.39.1.5 99399 1w3wA 327 86.40 2al1A 436 87.81 c.1.11.1,d.54.1.1 126949,126950 1j32A 388 88.90 c.67.1.1 77067