# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1po5A 476 3.49e-67 a.104.1.1 94963 1tqnA 486 4.61e-67 a.104.1.1 107238 2fdvA 476 9.15e-67 3c6gA 479 3.26e-66 2hi4A 495 4.66e-66 1r9oA 477 3.23e-65 a.104.1.1 104878 3b6hA 498 3.86e-65 3b98A 475 4.78e-65 1h5zA 455 6.76e-65 a.104.1.1 90622 1x8vA 455 7.57e-65 a.104.1.1 114968 1zo4A 473 9.67e-65 2ve3A 444 1.04e-64 1jpzA 473 1.38e-64 a.104.1.1 67069 2cibA 455 1.36e-63 2iagA 482 2.69e-63 2ij2A 470 1.11e-62 a.104.1.1 137449 2zbxA 412 2.49e-56 1izoA 417 6.14e-55 a.104.1.1 83851 1gwiA 411 1.08e-54 a.104.1.1 76364 3bujA 397 2.77e-54 1z8oA 404 3.53e-54 a.104.1.1 124722 1yrcA 414 3.81e-54 a.104.1.1 123917 3bdzA 397 6.89e-54 1uedA 406 7.16e-54 a.104.1.1 99256 1jfbA 404 1.36e-53 a.104.1.1 66624 1s1fA 406 2.99e-53 a.104.1.1 112008 1t2bA 397 3.37e-53 1q5dA 419 6.16e-53 a.104.1.1 95891 1cptA 428 8.41e-53 a.104.1.1 18968 1cpt 412 1.06e-52 2fr7A 412 1.10e-52 1n97A 389 1.64e-52 a.104.1.1 80335 1n40A 396 3.56e-52 a.104.1.1 79977 2uuqA 414 9.42e-52 2z3tA 425 5.19e-51 1odoA 408 1.11e-50 a.104.1.1 92783 1lfkA 398 1.81e-50 a.104.1.1 77926 2rfbA 343 4.80e-49 1io7A 368 8.21e-45 a.104.1.1 18971 2dvtA 327 1.537 c.1.9.15 131793 2q83A 346 3.432 2scpA 174 6.897 a.39.1.5 17256 1qqfA 277 8.929 a.102.4.4 18875 2basA 431 9.855 c.1.33.1,d.110.6.2 128244,128245 2hhcA 330 10.43 1nd6A 354 12.54 c.60.1.2 80407 1dceB 331 14.27 a.102.4.3 18872 2qahA 303 14.36 1e1oA 504 14.78 b.40.4.1,d.104.1.1 25258,40714 2id3A 225 16.13 a.4.1.9,a.121.1.1 137261,137262 2pq6A 482 17.54 2b61A 377 17.94 1sxjC 340 17.94 a.80.1.1,c.37.1.20 106085,106086 1qz9A 416 18.03 c.67.1.3 96621 3c3kA 285 19.34 1a9nB 96 21.24 d.58.7.1 39165 2fepA 289 22.11 2qzvA 873 24.08 2r44A 331 24.95 2gwdA 449 25.02 2nx9A 464 26.32 2hm7A 310 27.12 3clqA 421 27.25 2sqcA 631 29.15 a.102.4.2,a.102.4.2 18854,18855 2rgyA 290 30.07 2rghA 571 30.10 1jftA 340 31.54 a.35.1.5,c.93.1.1 66652,66653 2ccmA 191 32.89 1cjcA 460 32.97 c.3.1.1,c.4.1.1 30319,30604 1wn1A 356 33.61 1r5lA 262 35.43 a.5.3.1,c.13.1.1 97099,97100 1lzlA 323 35.77 c.69.1.2 78306 1hzfA 367 37.42 a.102.4.4 76731 1n46A 258 38.57 a.123.1.1 85315 1wy2A 351 39.49 2ct9A 208 40.18 1sxjE 354 41.17 a.80.1.1,c.37.1.20 106089,106090 2di4A 238 41.52 a.269.1.1 131522 2bwvA 440 41.53 c.55.2.1,d.127.1.1 129387,129388 1t5oA 351 41.67 c.124.1.5 106459 2f9dA 125 42.20 d.58.7.1 133159 2go9A 161 43.64 1w7jB 151 44.20 a.39.1.5 120690 3bilA 348 44.70 3bv0A 437 46.47 2jg2A 422 46.98 2nwfA 141 47.67 1upvA 257 48.00 a.123.1.1 113398 1wzlA 585 48.31 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1in4A 334 48.33 a.4.5.11,c.37.1.20 62597,62598 2b4uA 335 48.53 2qk2A 242 49.26 1umpA 631 49.70 a.102.4.2,a.102.4.2 99619,99620 2db0A 253 49.97 1usgA 346 50.14 c.93.1.1 99864 2zcmA 192 50.41 2nooA 502 51.33 1t5jA 313 51.45 a.209.1.1 99125 1is1A 185 51.70 d.67.3.1 83704 1oyzA 280 52.23 a.118.1.16 93775 2qt1A 207 52.98 1kmkA 406 54.84 c.67.1.3 68696 1ni4A 365 56.07 c.36.1.11 85728 2ovkC 159 56.47 2d6yA 202 56.88 a.4.1.9,a.121.1.1 131313,131314 1nu4A 97 58.04 d.58.7.1 80731 1tn6B 437 60.91 a.102.4.3 112528 2nsaA 170 61.97 1cznA 169 62.20 c.23.5.1 31181 1yzxA 226 62.60 2fp3A 316 62.75 1h7eA 245 62.93 c.68.1.13 60717 2g3bA 208 64.70 a.4.1.9,a.121.1.1 134558,134559 1khvA 516 65.76 e.8.1.4 68627 2q4uA 272 68.85 1fxoA 293 70.55 c.68.1.6 34524 1jf9A 408 71.58 c.67.1.3 62931 2aaaA 484 72.46 b.71.1.1,c.1.8.1 27777,28764 2e8yA 718 73.65 1fnnA 389 74.10 a.4.5.11,c.37.1.20 16129,32426 2o7rA 338 74.50 1vicA 262 76.51 c.68.1.13 100756 2puhA 286 76.80 2ffiA 288 78.12 c.1.9.15 133385 1l9xA 315 78.41 c.23.16.1 73762 1kzyC 259 79.33 c.15.1.4,c.15.1.4 73383,73384 1wqgA 185 80.37 2v3zA 440 82.75 1n4qB 377 83.32 a.102.4.3 91636 2dyuA 334 86.06 3bosA 242 86.75 2e7uA 424 86.95 1munA 225 87.62 a.96.1.2 18744 1gl6A 436 87.92 c.37.1.11 70259 1z5hA 780 88.26 1kwgA 645 88.74 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563