# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1po5A 476 6.67e-67 a.104.1.1 94963 1tqnA 486 1.13e-66 a.104.1.1 107238 2fdvA 476 1.93e-66 3c6gA 479 6.30e-66 2hi4A 495 9.42e-66 1h5zA 455 9.15e-65 a.104.1.1 90622 1x8vA 455 1.05e-64 a.104.1.1 114968 1r9oA 477 1.49e-64 a.104.1.1 104878 3b6hA 498 1.81e-64 1zo4A 473 1.94e-64 1jpzA 473 2.41e-64 a.104.1.1 67069 2ve3A 444 2.47e-64 3b98A 475 2.89e-64 2cibA 455 3.47e-63 2iagA 482 1.01e-62 2ij2A 470 1.78e-62 a.104.1.1 137449 2zbxA 412 5.26e-56 1izoA 417 7.38e-55 a.104.1.1 83851 1gwiA 411 1.64e-54 a.104.1.1 76364 3bujA 397 2.14e-54 1yrcA 414 4.20e-54 a.104.1.1 123917 1z8oA 404 6.61e-54 a.104.1.1 124722 3bdzA 397 1.23e-53 1uedA 406 1.43e-53 a.104.1.1 99256 1jfbA 404 1.76e-53 a.104.1.1 66624 1s1fA 406 3.48e-53 a.104.1.1 112008 1t2bA 397 6.33e-53 1q5dA 419 8.77e-53 a.104.1.1 95891 2fr7A 412 1.73e-52 1cptA 428 2.15e-52 a.104.1.1 18968 1cpt 412 2.24e-52 1n97A 389 4.10e-52 a.104.1.1 80335 1n40A 396 6.93e-52 a.104.1.1 79977 2uuqA 414 1.20e-51 2z3tA 425 6.43e-51 1odoA 408 2.51e-50 a.104.1.1 92783 1lfkA 398 2.82e-50 a.104.1.1 77926 2rfbA 343 4.77e-49 1io7A 368 5.90e-45 a.104.1.1 18971 2dvtA 327 2.008 c.1.9.15 131793 2scpA 174 4.448 a.39.1.5 17256 1qqfA 277 10.99 a.102.4.4 18875 1nd6A 354 11.37 c.60.1.2 80407 2hhcA 330 11.43 2q83A 346 11.80 2basA 431 12.22 c.1.33.1,d.110.6.2 128244,128245 1e1oA 504 13.11 b.40.4.1,d.104.1.1 25258,40714 2nx9A 464 14.79 2qzvA 873 16.80 2id3A 225 17.24 a.4.1.9,a.121.1.1 137261,137262 2b61A 377 18.44 2qahA 303 20.37 1qz9A 416 20.45 c.67.1.3 96621 1dceB 331 21.56 a.102.4.3 18872 2r44A 331 22.23 1a9nB 96 24.33 d.58.7.1 39165 2pq6A 482 25.60 3bv0A 437 26.21 1wzlA 585 27.65 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 3clqA 421 28.04 1sxjC 340 28.08 a.80.1.1,c.37.1.20 106085,106086 2hm7A 310 29.45 3c3kA 285 29.76 2b4uA 335 29.95 1cjcA 460 30.38 c.3.1.1,c.4.1.1 30319,30604 2db0A 253 30.84 2rgyA 290 31.22 2bwvA 440 31.98 c.55.2.1,d.127.1.1 129387,129388 1sxjE 354 35.14 a.80.1.1,c.37.1.20 106089,106090 1lzlA 323 35.41 c.69.1.2 78306 1oyzA 280 35.72 a.118.1.16 93775 2fepA 289 35.83 1wn1A 356 36.29 2sqcA 631 36.41 a.102.4.2,a.102.4.2 18854,18855 1h7eA 245 37.22 c.68.1.13 60717 2gwdA 449 37.71 1n46A 258 38.99 a.123.1.1 85315 2zcmA 192 39.46 2go9A 161 39.58 2jg2A 422 40.08 1r5lA 262 40.79 a.5.3.1,c.13.1.1 97099,97100 1t5jA 313 42.01 a.209.1.1 99125 1umpA 631 42.07 a.102.4.2,a.102.4.2 99619,99620 2ccmA 191 45.62 1in4A 334 45.68 a.4.5.11,c.37.1.20 62597,62598 2ct9A 208 45.86 1ni4A 365 47.21 c.36.1.11 85728 2d6yA 202 48.43 a.4.1.9,a.121.1.1 131313,131314 2aaaA 484 49.29 b.71.1.1,c.1.8.1 27777,28764 1vicA 262 49.95 c.68.1.13 100756 2f9dA 125 50.39 d.58.7.1 133159 1tn6B 437 52.10 a.102.4.3 112528 2rghA 571 52.13 2uxyA 341 53.63 1jftA 340 53.96 a.35.1.5,c.93.1.1 66652,66653 1upvA 257 55.55 a.123.1.1 113398 2q4uA 272 56.33 2di4A 238 57.64 a.269.1.1 131522 1hzfA 367 58.50 a.102.4.4 76731 1usgA 346 58.72 c.93.1.1 99864 2qk2A 242 59.18 1w7jB 151 59.61 a.39.1.5 120690 1nu4A 97 62.81 d.58.7.1 80731 1kmkA 406 66.05 c.67.1.3 68696 2ixaA 444 66.71 2iw1A 374 67.02 c.87.1.8 137738 1cznA 169 68.27 c.23.5.1 31181 1wy2A 351 70.26 1g6gA 127 72.60 b.26.1.2 23916 2nooA 502 72.69 1gl6A 436 73.13 c.37.1.11 70259 2zb9A 214 73.33 1z45A 699 73.55 b.30.5.4,c.2.1.2 124427,124428 2nsaA 170 73.91 2o7rA 338 74.87 1yzxA 226 75.48 2d51A 406 75.69 2qt1A 207 76.11 2dyuA 334 77.43 1o7fA 469 77.61 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1wdcB 156 78.10 a.39.1.5 17302 1jf9A 408 78.33 c.67.1.3 62931 2prrA 197 80.20 1is1A 185 80.91 d.67.3.1 83704 1fxoA 293 81.37 c.68.1.6 34524 2g3bA 208 82.40 a.4.1.9,a.121.1.1 134558,134559 2q3mA 326 83.46 c.37.1.5 139795 2ojpA 292 83.84 1uhnA 189 83.94 a.39.1.5 99399 1fnnA 389 84.51 a.4.5.11,c.37.1.20 16129,32426 1z5hA 780 85.41 2o7iA 592 85.90 1xqrA 296 85.94 a.118.1.21 122241 2ovkC 159 87.83 1n4qB 377 88.42 a.102.4.3 91636 1l6sA 323 88.60 c.1.10.3 73627