# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 1.36e-56 1r9oA 477 1.99e-56 a.104.1.1 104878 1tqnA 486 3.19e-56 a.104.1.1 107238 1po5A 476 1.21e-55 a.104.1.1 94963 3c6gA 479 1.34e-55 2ve3A 444 3.63e-55 2hi4A 495 6.59e-55 1h5zA 455 6.80e-55 a.104.1.1 90622 3b98A 475 1.05e-54 1x8vA 455 1.07e-54 a.104.1.1 114968 1zo4A 473 2.02e-54 3b6hA 498 3.46e-54 1jpzA 473 2.03e-53 a.104.1.1 67069 2cibA 455 2.05e-53 2ij2A 470 2.31e-53 a.104.1.1 137449 2iagA 482 4.06e-53 2zbxA 412 1.28e-47 1yrcA 414 7.14e-47 a.104.1.1 123917 1izoA 417 1.86e-46 a.104.1.1 83851 3bujA 397 2.27e-46 3bdzA 397 2.54e-46 1gwiA 411 2.94e-46 a.104.1.1 76364 1z8oA 404 4.56e-46 a.104.1.1 124722 1t2bA 397 4.87e-46 1uedA 406 5.88e-46 a.104.1.1 99256 1s1fA 406 6.06e-46 a.104.1.1 112008 1jfbA 404 1.39e-45 a.104.1.1 66624 2fr7A 412 1.54e-45 1q5dA 419 1.75e-45 a.104.1.1 95891 1cptA 428 3.86e-45 a.104.1.1 18968 1cpt 412 4.67e-45 1n97A 389 6.94e-45 a.104.1.1 80335 1n40A 396 1.78e-44 a.104.1.1 79977 1odoA 408 2.49e-44 a.104.1.1 92783 2z3tA 425 4.56e-44 2uuqA 414 4.97e-44 1lfkA 398 3.31e-43 a.104.1.1 77926 2rfbA 343 5.16e-42 1io7A 368 6.02e-39 a.104.1.1 18971 1nd6A 354 3.823 c.60.1.2 80407 1pjrA 724 4.039 c.37.1.19,c.37.1.19 32391,32392 2hhcA 330 5.038 1gntA 553 5.913 e.26.1.1 70290 2r6oA 294 6.326 1t5oA 351 7.467 c.124.1.5 106459 3bjuA 521 7.687 1e1oA 504 8.774 b.40.4.1,d.104.1.1 25258,40714 2q83A 346 13.56 1khvA 516 19.47 e.8.1.4 68627 2ckwA 515 19.77 1gnlA 544 20.09 e.26.1.1 70287 2r4vA 247 20.43 1mdoA 393 21.49 c.67.1.4 79013 2ovkC 159 21.62 1th0A 226 22.15 d.3.1.7 106903 2v0hA 456 22.77 1cznA 169 24.00 c.23.5.1 31181 1gc0A 398 30.30 c.67.1.3 70168 3d1cA 369 31.79 2basA 431 31.80 c.1.33.1,d.110.6.2 128244,128245 1h3nA 878 33.37 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2go9A 161 33.93 1rwyA 109 35.00 a.39.1.4 98002 1pvaA 110 35.68 a.39.1.4 17207 1qhxA 178 35.76 c.37.1.3 31936 1a2xA 159 36.18 a.39.1.5 17251 2ot3A 274 36.21 a.222.1.1 139311 2h1yA 321 36.44 2dbyA 368 36.89 1fxoA 293 38.27 c.68.1.6 34524 2o7cA 398 38.87 1lvwA 295 39.61 c.68.1.6 84723 1w6kA 732 40.01 a.102.4.2,a.102.4.2 114271,114272 2cuyA 305 40.87 1e7uA 961 41.71 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1a9nB 96 42.81 d.58.7.1 39165 1oyzA 280 42.99 a.118.1.16 93775 2qt1A 207 43.74 2e6fA 314 46.13 1h3fA 432 48.20 c.26.1.1,d.66.1.4 76631,76632 1v0jA 399 49.13 2qkoA 215 49.67 1h0hA 977 52.03 b.52.2.2,c.81.1.1 76435,76436 1lj5A 379 52.18 e.1.1.1 73928 1nm2A 317 53.34 c.19.1.1,d.58.23.1 80654,80655 1e8yA 966 54.32 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1h6dA 433 57.73 c.2.1.3,d.81.1.5 65656,65657 1g8iA 190 57.94 a.39.1.5 60363 2yzhA 171 60.21 2cvbA 188 62.69 c.47.1.10 130859 2e1vA 454 63.40 2scpA 174 63.54 a.39.1.5 17256 2gv5A 161 63.69 1o4sA 389 64.74 c.67.1.1 86620 2iw0A 254 64.98 c.6.2.3 137737 2hraA 209 66.82 2fgeA 995 67.05 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1z90A 469 68.69 b.81.1.4,c.68.1.5 124732,124733 2uubB 256 68.77 c.23.15.1 139932 1tf1A 198 69.47 d.110.2.2 106826 2cc0A 195 70.10 c.6.2.3 130209 1topA 162 71.04 a.39.1.5 17223 1e5eA 404 71.74 c.67.1.3 59265 1z5yE 149 72.41 c.47.1.10 124498 1keaA 221 76.19 a.96.1.2 68491 2hpkA 208 76.47 2ixaA 444 76.65 2fcr 173 76.76 1hv9A 456 77.95 b.81.1.4,c.68.1.5 28060,34518 2herA 368 79.90 1z6mA 175 80.48 c.47.1.13 124529 4cpvA 108 81.35 a.39.1.4 17198 1nvmA 345 82.89 a.5.7.1,c.1.10.5 86249,86250 2cw6A 298 83.95 2ph7A 246 84.04 3bqaA 148 84.59 1t5jA 313 85.63 a.209.1.1 99125 1uhnA 189 86.16 a.39.1.5 99399 1ynfA 458 86.24 d.126.1.7 123723 2obhA 143 88.90 1ep3A 311 89.87 c.1.4.1 28597