# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3c6gA 479 3.15e-63 2fdvA 476 4.79e-63 1po5A 476 1.32e-62 a.104.1.1 94963 2hi4A 495 4.44e-62 1tqnA 486 1.67e-61 a.104.1.1 107238 1h5zA 455 2.32e-61 a.104.1.1 90622 3b6hA 498 3.21e-61 3b98A 475 3.53e-61 1x8vA 455 3.60e-61 a.104.1.1 114968 1zo4A 473 8.58e-61 2ve3A 444 1.47e-60 1jpzA 473 2.03e-60 a.104.1.1 67069 1r9oA 477 2.44e-60 a.104.1.1 104878 2cibA 455 4.28e-59 2iagA 482 1.26e-58 2ij2A 470 1.45e-58 a.104.1.1 137449 2zbxA 412 3.43e-52 1yrcA 414 1.49e-51 a.104.1.1 123917 3bujA 397 4.57e-51 1izoA 417 5.21e-51 a.104.1.1 83851 1z8oA 404 5.25e-51 a.104.1.1 124722 1gwiA 411 6.06e-51 a.104.1.1 76364 3bdzA 397 1.06e-50 1t2bA 397 2.33e-50 2fr7A 412 2.71e-50 1s1fA 406 3.71e-50 a.104.1.1 112008 1uedA 406 4.89e-50 a.104.1.1 99256 1jfbA 404 5.33e-50 a.104.1.1 66624 1q5dA 419 7.53e-50 a.104.1.1 95891 1n40A 396 3.79e-49 a.104.1.1 79977 2uuqA 414 4.88e-49 1n97A 389 1.02e-48 a.104.1.1 80335 1cptA 428 1.13e-48 a.104.1.1 18968 1cpt 412 1.19e-48 2z3tA 425 1.88e-48 1odoA 408 6.59e-48 a.104.1.1 92783 1lfkA 398 2.30e-46 a.104.1.1 77926 2rfbA 343 8.51e-46 1io7A 368 5.79e-43 a.104.1.1 18971 2nx9A 464 0.8928 2pq6A 482 3.488 2hm7A 310 3.490 1nd6A 354 3.739 c.60.1.2 80407 1lucB 324 3.804 c.1.16.1 29548 1e1oA 504 4.127 b.40.4.1,d.104.1.1 25258,40714 2basA 431 5.410 c.1.33.1,d.110.6.2 128244,128245 1ohvA 472 5.679 c.67.1.4 93031 2qt1A 207 7.990 2i8aA 252 8.139 2cduA 452 10.92 2di4A 238 13.91 a.269.1.1 131522 2q4uA 272 14.50 2scpA 174 15.07 a.39.1.5 17256 1nhsA 447 17.57 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1dceB 331 18.49 a.102.4.3 18872 2hhcA 330 18.88 1a9xA 1058 19.80 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1k1xA 659 20.19 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2ff4A 388 20.94 a.4.6.1,a.118.8.3,b.26.1.2 133367,133368,133369 1vr5A 547 21.23 c.94.1.1 120437 3b40A 417 21.65 1cjcA 460 22.62 c.3.1.1,c.4.1.1 30319,30604 1hx0A 496 23.33 b.71.1.1,c.1.8.1 61346,61347 1ezwA 349 23.90 c.1.16.3 29558 1umpA 631 24.73 a.102.4.2,a.102.4.2 99619,99620 1mdoA 393 25.92 c.67.1.4 79013 2bwvA 440 26.08 c.55.2.1,d.127.1.1 129387,129388 2hrdA 253 26.47 2al1A 436 26.64 c.1.11.1,d.54.1.1 126949,126950 1ni4A 365 27.04 c.36.1.11 85728 2dvtA 327 28.28 c.1.9.15 131793 1xdiA 499 28.37 c.3.1.5,d.87.1.1 115160,115161 1w63A 618 28.52 i.23.1.1 109192 1lzlA 323 30.33 c.69.1.2 78306 1t5jA 313 31.20 a.209.1.1 99125 1w6kA 732 31.75 a.102.4.2,a.102.4.2 114271,114272 1is1A 185 32.41 d.67.3.1 83704 1u8xX 472 34.12 c.2.1.5,d.162.1.2 107741,107742 1smdA 496 35.05 b.71.1.1,c.1.8.1 27768,28755 1cs0A 1073 36.97 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1sr9A 644 39.72 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2gwdA 449 40.11 1t08A 519 40.21 a.118.1.1 112190 2ejaA 338 40.50 2p36A 335 40.98 1uhkA 191 41.75 a.39.1.5 119681 1k0mA 241 42.41 a.45.1.1,c.47.1.5 67949,67950 1dljA 402 42.53 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1wy2A 351 44.01 1h7eA 245 44.38 c.68.1.13 60717 1dqaA 467 44.58 d.58.20.1,d.179.1.1 39364,42585 1d6mA 653 44.76 e.10.1.1 43248 1ktbA 405 44.79 b.71.1.1,c.1.8.1 72960,72961 1wqgA 185 44.82 3bv0A 437 45.44 1cb0A 283 46.83 c.56.2.1 33790 1wstA 417 47.60 c.67.1.1 121244 1vliA 385 47.62 b.85.1.1,c.1.10.6 108830,108831 2r40D 266 49.36 2oblA 347 49.39 1iseA 185 50.15 d.67.3.1 90691 1tvlA 454 50.85 c.1.16.4 107366 1ffyA 917 51.46 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 3d1cA 369 51.83 1ti6A 875 52.57 b.52.2.2,c.81.1.1 106974,106975 2fepA 289 56.50 2dpyA 438 57.71 2v3zA 440 57.72 1oyzA 280 58.09 a.118.1.16 93775 1kwgA 645 58.13 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1fxoA 293 58.19 c.68.1.6 34524 2q4fA 149 58.68 a.24.10.2 139847 2db0A 253 59.95 1fc4A 401 59.97 c.67.1.4 59760 2b81A 323 60.82 1o69A 394 62.01 c.67.1.4 92560 1tn6B 437 63.55 a.102.4.3 112528 2ptzA 432 65.00 3cetA 334 65.02 2qzvA 873 66.26 1o7fA 469 66.27 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2a84A 300 68.27 c.26.1.4 126389 1ur4A 399 69.22 c.1.8.3 113402 2q83A 346 70.17 1wdcB 156 70.33 a.39.1.5 17302 1h3fA 432 71.38 c.26.1.1,d.66.1.4 76631,76632 2go9A 161 71.61 1vicA 262 71.97 c.68.1.13 100756 2fjuB 799 72.33 1m45A 148 73.48 a.39.1.5 78598 3clqA 421 73.66 1khvA 516 73.84 e.8.1.4 68627 2q3mA 326 74.22 c.37.1.5 139795 4pgaA 337 74.33 c.88.1.1 35565 1l6sA 323 74.50 c.1.10.3 73627 2himA 358 75.43 1fcyA 236 76.35 a.123.1.1 19282 2aouA 292 76.48 c.66.1.19 127100 2cy8A 453 77.69 2hs3A 603 77.78 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1r5lA 262 78.03 a.5.3.1,c.13.1.1 97099,97100 1a99A 344 78.51 c.94.1.1 35812 2is6A 680 79.01 1sxjE 354 79.06 a.80.1.1,c.37.1.20 106089,106090 2b9wA 424 79.48 3cbuA 214 80.87 1fnnA 389 82.11 a.4.5.11,c.37.1.20 16129,32426 3bjdA 332 82.56 1t0fA 276 82.63 a.4.5.27,c.52.1.16 112195,112196 1rh9A 373 84.04 c.1.8.3 118773 1b5pA 385 84.47 c.67.1.1 90403 1lrzA 426 84.62 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2akzA 439 85.78 c.1.11.1,d.54.1.1 126944,126945 2qk2A 242 87.16 1qqfA 277 87.34 a.102.4.4 18875 1ta9A 450 88.55 1w7jB 151 88.56 a.39.1.5 120690 2ggoA 401 89.33