# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 2.38e-67 a.104.1.1 107238 2fdvA 476 2.51e-67 1po5A 476 7.89e-67 a.104.1.1 94963 3c6gA 479 9.91e-67 2hi4A 495 2.50e-66 1x8vA 455 6.14e-66 a.104.1.1 114968 3b6hA 498 1.22e-65 1h5zA 455 1.50e-65 a.104.1.1 90622 3b98A 475 2.06e-65 2ve3A 444 2.95e-65 1r9oA 477 4.50e-65 a.104.1.1 104878 1zo4A 473 1.24e-64 1jpzA 473 1.56e-64 a.104.1.1 67069 2cibA 455 7.58e-64 2ij2A 470 8.83e-63 a.104.1.1 137449 2iagA 482 1.34e-62 2zbxA 412 3.22e-56 1izoA 417 4.86e-55 a.104.1.1 83851 1gwiA 411 6.68e-55 a.104.1.1 76364 3bujA 397 1.11e-54 1yrcA 414 2.72e-54 a.104.1.1 123917 1z8oA 404 2.87e-54 a.104.1.1 124722 1jfbA 404 3.71e-54 a.104.1.1 66624 1s1fA 406 6.03e-54 a.104.1.1 112008 1uedA 406 6.06e-54 a.104.1.1 99256 3bdzA 397 6.97e-54 1q5dA 419 1.49e-53 a.104.1.1 95891 2fr7A 412 1.96e-53 1t2bA 397 2.02e-53 1cpt 412 4.72e-53 1n97A 389 7.88e-53 a.104.1.1 80335 1cptA 428 8.75e-53 a.104.1.1 18968 1n40A 396 1.04e-52 a.104.1.1 79977 2uuqA 414 2.39e-52 2z3tA 425 3.88e-51 1odoA 408 1.06e-50 a.104.1.1 92783 1lfkA 398 1.99e-50 a.104.1.1 77926 2rfbA 343 3.06e-49 1io7A 368 4.76e-46 a.104.1.1 18971 2dvtA 327 0.6317 c.1.9.15 131793 2qzvA 873 3.763 2hhcA 330 4.171 1t5jA 313 8.822 a.209.1.1 99125 2basA 431 10.62 c.1.33.1,d.110.6.2 128244,128245 2nx9A 464 10.84 2scpA 174 13.19 a.39.1.5 17256 2pq6A 482 13.67 1e1oA 504 15.17 b.40.4.1,d.104.1.1 25258,40714 1nd6A 354 15.59 c.60.1.2 80407 2ixaA 444 15.73 2q83A 346 16.71 2b4uA 335 17.07 1smdA 496 19.23 b.71.1.1,c.1.8.1 27768,28755 1h7eA 245 19.35 c.68.1.13 60717 1pjrA 724 20.05 c.37.1.19,c.37.1.19 32391,32392 2db0A 253 23.46 1lzlA 323 24.22 c.69.1.2 78306 1dqaA 467 25.82 d.58.20.1,d.179.1.1 39364,42585 1cjcA 460 26.45 c.3.1.1,c.4.1.1 30319,30604 2bwvA 440 30.57 c.55.2.1,d.127.1.1 129387,129388 2rghA 571 30.96 2go9A 161 32.62 1k7iA 479 32.72 b.80.7.1,d.92.1.6 77281,77282 2qt1A 207 33.36 1twfA 1733 33.82 e.29.1.2 112725 1is1A 185 35.72 d.67.3.1 83704 1vicA 262 36.67 c.68.1.13 100756 1wzlA 585 36.84 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1v0jA 399 37.54 1w7jB 151 37.70 a.39.1.5 120690 2qahA 303 37.77 1a9nB 96 38.33 d.58.7.1 39165 2b9wA 424 39.66 2f9dA 125 40.23 d.58.7.1 133159 1ni4A 365 40.61 c.36.1.11 85728 2fp3A 316 40.91 2o7rA 338 42.37 2nooA 502 43.02 2e8yA 718 44.87 2q3mA 326 46.10 c.37.1.5 139795 1khvA 516 46.20 e.8.1.4 68627 2i8aA 252 46.36 2r4vA 247 46.83 1wqgA 185 47.10 1sxjE 354 47.72 a.80.1.1,c.37.1.20 106089,106090 2ejaA 338 54.20 1cs0A 1073 54.25 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2dyuA 334 54.81 1qqfA 277 56.82 a.102.4.4 18875 2rijA 387 57.19 1lqtA 456 57.99 c.3.1.1,c.4.1.1 74198,74199 1iseA 185 60.44 d.67.3.1 90691 1o7fA 469 61.09 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2jg2A 422 61.40 2e5iA 124 62.80 1h0hA 977 63.50 b.52.2.2,c.81.1.1 76435,76436 3cbuA 214 64.58 1bco 327 64.98 2d51A 406 65.09 2dhxA 104 65.25 1pe1A 267 67.29 c.1.10.4 94591 1cznA 169 70.56 c.23.5.1 31181 2ggoA 401 71.44 1oyzA 280 72.14 a.118.1.16 93775 2prrA 197 72.41 1k0mA 241 72.58 a.45.1.1,c.47.1.5 67949,67950 1t5oA 351 73.72 c.124.1.5 106459 1sxjC 340 75.60 a.80.1.1,c.37.1.20 106085,106086 1g6gA 127 75.78 b.26.1.2 23916 1rwyA 109 76.70 a.39.1.4 98002 1ep3A 311 77.96 c.1.4.1 28597 2hm7A 310 79.94 1csn 298 80.50 2pfxA 191 83.12 3d1cA 369 84.51 2uxyA 341 85.21 2ozlA 365 85.45 1tn6B 437 85.96 a.102.4.3 112528 2ve7C 250 86.84 1pvaA 110 87.00 a.39.1.4 17207 1c4xA 285 89.18 c.69.1.10 34684 2ct9A 208 89.98