# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3c6gA 479 2.71e-63 1tqnA 486 4.06e-63 a.104.1.1 107238 2fdvA 476 4.71e-63 1po5A 476 4.85e-63 a.104.1.1 94963 2hi4A 495 9.26e-63 3b6hA 498 9.29e-62 3b98A 475 1.03e-61 1r9oA 477 1.18e-61 a.104.1.1 104878 1x8vA 455 1.62e-61 a.104.1.1 114968 2ve3A 444 2.18e-61 1h5zA 455 3.24e-61 a.104.1.1 90622 1zo4A 473 5.02e-61 1jpzA 473 6.57e-61 a.104.1.1 67069 2cibA 455 5.95e-60 2ij2A 470 1.70e-59 a.104.1.1 137449 2iagA 482 2.39e-59 2zbxA 412 1.02e-52 1izoA 417 6.72e-52 a.104.1.1 83851 1gwiA 411 1.24e-51 a.104.1.1 76364 1yrcA 414 3.92e-51 a.104.1.1 123917 1z8oA 404 5.61e-51 a.104.1.1 124722 3bujA 397 6.74e-51 1jfbA 404 7.11e-51 a.104.1.1 66624 1uedA 406 8.39e-51 a.104.1.1 99256 1s1fA 406 9.92e-51 a.104.1.1 112008 3bdzA 397 1.65e-50 1t2bA 397 4.49e-50 1q5dA 419 5.30e-50 a.104.1.1 95891 2fr7A 412 5.51e-50 1n97A 389 7.13e-50 a.104.1.1 80335 1cpt 412 1.11e-49 1cptA 428 1.20e-49 a.104.1.1 18968 1n40A 396 1.50e-49 a.104.1.1 79977 2uuqA 414 2.68e-49 2z3tA 425 1.83e-48 1odoA 408 3.71e-48 a.104.1.1 92783 1lfkA 398 3.03e-47 a.104.1.1 77926 2rfbA 343 1.96e-46 1io7A 368 4.84e-43 a.104.1.1 18971 2dvtA 327 1.140 c.1.9.15 131793 2hhcA 330 2.623 2basA 431 4.936 c.1.33.1,d.110.6.2 128244,128245 2pq6A 482 4.991 1nd6A 354 8.142 c.60.1.2 80407 1pjrA 724 8.567 c.37.1.19,c.37.1.19 32391,32392 1t5jA 313 9.777 a.209.1.1 99125 2scpA 174 10.97 a.39.1.5 17256 2nx9A 464 11.93 1nt4A 391 18.40 c.60.1.2 92102 1h7eA 245 20.56 c.68.1.13 60717 2db0A 253 20.61 2q83A 346 23.19 2qzvA 873 25.34 2ixaA 444 26.61 1dosA 358 28.59 c.1.10.2 29175 1tn6B 437 29.59 a.102.4.3 112528 2f9dA 125 29.64 d.58.7.1 133159 1is1A 185 29.78 d.67.3.1 83704 1v0jA 399 29.79 1a9nB 96 31.95 d.58.7.1 39165 1lzlA 323 33.29 c.69.1.2 78306 1smdA 496 34.59 b.71.1.1,c.1.8.1 27768,28755 1dceB 331 34.95 a.102.4.3 18872 1w7jB 151 36.47 a.39.1.5 120690 2ph7A 246 36.82 1khvA 516 37.09 e.8.1.4 68627 2e8yA 718 37.12 1wqgA 185 38.97 2is6A 680 39.96 1vicA 262 41.05 c.68.1.13 100756 2qt1A 207 41.09 1r5lA 262 42.96 a.5.3.1,c.13.1.1 97099,97100 2go9A 161 43.98 2oyoA 196 44.71 2r4vA 247 46.53 1qqfA 277 47.21 a.102.4.4 18875 2aaaA 484 48.41 b.71.1.1,c.1.8.1 27777,28764 1k04A 162 48.51 a.24.14.1 67904 1qhxA 178 48.67 c.37.1.3 31936 1wzlA 585 50.64 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2uxyA 341 52.39 1iseA 185 53.95 d.67.3.1 90691 1k0mA 241 54.83 a.45.1.1,c.47.1.5 67949,67950 2fepA 289 55.35 1cjcA 460 57.05 c.3.1.1,c.4.1.1 30319,30604 1aua 296 57.72 1ep3A 311 57.98 c.1.4.1 28597 2ragA 417 58.22 2nooA 502 59.19 2prrA 197 60.31 1sxjE 354 60.34 a.80.1.1,c.37.1.20 106089,106090 1twfA 1733 62.29 e.29.1.2 112725 1h6dA 433 62.69 c.2.1.3,d.81.1.5 65656,65657 2bwvA 440 63.03 c.55.2.1,d.127.1.1 129387,129388 1oyzA 280 63.07 a.118.1.16 93775 1e1oA 504 64.11 b.40.4.1,d.104.1.1 25258,40714 1cznA 169 64.42 c.23.5.1 31181 2pfxA 191 64.93 2fp3A 316 65.63 2dyuA 334 71.24 1w6kA 732 71.68 a.102.4.2,a.102.4.2 114271,114272 2yv7A 260 72.94 1sxjA 511 73.12 a.80.1.1,c.37.1.20 106081,106082 2haiA 576 73.96 3cbuA 214 73.97 1h0hA 977 74.80 b.52.2.2,c.81.1.1 76435,76436 2ojpA 292 74.90 2q4uA 272 76.35 2yvuA 186 77.02 1pvaA 110 77.90 a.39.1.4 17207 1uhkA 191 80.79 a.39.1.5 119681 1bplB 294 82.21 b.71.1.1 27716 1umpA 631 83.12 a.102.4.2,a.102.4.2 99619,99620 5csmA 256 83.47 a.130.1.2 19494 2hpkA 208 83.56 2nwfA 141 84.44 1xqrA 296 84.56 a.118.1.21 122241 2di4A 238 85.06 a.269.1.1 131522 1c4xA 285 85.10 c.69.1.10 34684 2rfgA 297 85.79 2e5iA 124 86.43 2d6yA 202 86.43 a.4.1.9,a.121.1.1 131313,131314 2f7tA 227 87.31 1hzfA 367 87.99 a.102.4.4 76731 1b5pA 385 88.49 c.67.1.1 90403 1pe1A 267 88.56 c.1.10.4 94591 2zcmA 192 88.58 3c86A 328 89.03 2dhxA 104 89.13