# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 5.46e-63 a.104.1.1 107238 1po5A 476 1.24e-62 a.104.1.1 94963 3c6gA 479 1.56e-62 2fdvA 476 2.09e-62 2hi4A 495 5.57e-62 1x8vA 455 3.45e-61 a.104.1.1 114968 1r9oA 477 4.11e-61 a.104.1.1 104878 3b6hA 498 5.15e-61 1h5zA 455 5.29e-61 a.104.1.1 90622 3b98A 475 5.33e-61 2ve3A 444 5.89e-61 1zo4A 473 1.58e-60 1jpzA 473 2.35e-60 a.104.1.1 67069 2cibA 455 1.77e-59 2ij2A 470 7.78e-59 a.104.1.1 137449 2iagA 482 9.83e-59 2zbxA 412 2.43e-52 1izoA 417 1.51e-51 a.104.1.1 83851 3bujA 397 2.85e-51 1gwiA 411 3.55e-51 a.104.1.1 76364 1yrcA 414 4.70e-51 a.104.1.1 123917 1jfbA 404 8.31e-51 a.104.1.1 66624 1z8oA 404 8.82e-51 a.104.1.1 124722 3bdzA 397 9.28e-51 1uedA 406 1.08e-50 a.104.1.1 99256 1s1fA 406 2.38e-50 a.104.1.1 112008 1t2bA 397 4.11e-50 2fr7A 412 5.55e-50 1q5dA 419 8.24e-50 a.104.1.1 95891 1n97A 389 9.79e-50 a.104.1.1 80335 1cptA 428 1.18e-49 a.104.1.1 18968 1cpt 412 1.21e-49 1n40A 396 5.03e-49 a.104.1.1 79977 2uuqA 414 7.24e-49 2z3tA 425 4.88e-48 1odoA 408 6.71e-48 a.104.1.1 92783 1lfkA 398 2.63e-47 a.104.1.1 77926 2rfbA 343 4.42e-46 1io7A 368 2.98e-43 a.104.1.1 18971 2dvtA 327 0.9779 c.1.9.15 131793 2hhcA 330 4.258 2pq6A 482 7.102 1nd6A 354 10.94 c.60.1.2 80407 2basA 431 10.97 c.1.33.1,d.110.6.2 128244,128245 2qzvA 873 11.23 2q83A 346 11.45 2scpA 174 11.75 a.39.1.5 17256 2nx9A 464 13.24 1t5jA 313 15.30 a.209.1.1 99125 1pjrA 724 19.31 c.37.1.19,c.37.1.19 32391,32392 2db0A 253 22.83 2fp3A 316 25.34 1w7jB 151 25.44 a.39.1.5 120690 2go9A 161 26.22 1a9nB 96 26.59 d.58.7.1 39165 1lzlA 323 27.15 c.69.1.2 78306 1cznA 169 27.45 c.23.5.1 31181 1dosA 358 27.49 c.1.10.2 29175 1tn6B 437 28.16 a.102.4.3 112528 2rghA 571 28.35 2ixaA 444 29.06 1is1A 185 29.09 d.67.3.1 83704 1khvA 516 29.29 e.8.1.4 68627 1wy2A 351 29.88 1smdA 496 33.65 b.71.1.1,c.1.8.1 27768,28755 1nt4A 391 35.23 c.60.1.2 92102 1v0jA 399 35.34 2f9dA 125 36.71 d.58.7.1 133159 2ggoA 401 37.00 1sxjE 354 38.44 a.80.1.1,c.37.1.20 106089,106090 1r5lA 262 38.86 a.5.3.1,c.13.1.1 97099,97100 2e5iA 124 38.98 1e1oA 504 40.48 b.40.4.1,d.104.1.1 25258,40714 1dceB 331 42.50 a.102.4.3 18872 1h7eA 245 42.64 c.68.1.13 60717 2ragA 417 44.99 2ovkC 159 45.77 2qahA 303 46.42 1vicA 262 48.03 c.68.1.13 100756 2e8yA 718 50.18 2r4vA 247 50.71 2jg2A 422 51.86 1fxoA 293 52.11 c.68.1.6 34524 1nu4A 97 52.83 d.58.7.1 80731 1cjcA 460 53.22 c.3.1.1,c.4.1.1 30319,30604 2dyuA 334 53.25 2qt1A 207 54.47 1wzlA 585 55.81 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2ph7A 246 55.86 1pe1A 267 55.95 c.1.10.4 94591 1qhxA 178 56.78 c.37.1.3 31936 2ve7C 250 57.71 1wqgA 185 60.02 2nooA 502 61.72 1twfA 1733 62.45 e.29.1.2 112725 2bwvA 440 63.82 c.55.2.1,d.127.1.1 129387,129388 1wn1A 356 64.16 1h6dA 433 64.97 c.2.1.3,d.81.1.5 65656,65657 2i8aA 252 65.69 1ni4A 365 65.94 c.36.1.11 85728 2fepA 289 65.95 2dpyA 438 66.17 3cbuA 214 66.95 1o7fA 469 68.19 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2aaaA 484 68.43 b.71.1.1,c.1.8.1 27777,28764 1qqfA 277 69.75 a.102.4.4 18875 1z90A 469 70.41 b.81.1.4,c.68.1.5 124732,124733 1k04A 162 71.71 a.24.14.1 67904 1yzxA 226 72.53 2qalC 232 74.86 2ojpA 292 75.47 2dhxA 104 75.73 1k0mA 241 75.84 a.45.1.1,c.47.1.5 67949,67950 2d6yA 202 75.85 a.4.1.9,a.121.1.1 131313,131314 2gwdA 449 76.31 2ct9A 208 76.31 1dqaA 467 76.46 d.58.20.1,d.179.1.1 39364,42585 1lvwA 295 78.03 c.68.1.6 84723 1z5hA 780 78.51 1l9xA 315 79.08 c.23.16.1 73762 2f7tA 227 80.20 2o7iA 592 80.50 1iseA 185 80.97 d.67.3.1 90691 2pv7A 298 84.25 1g6gA 127 85.75 b.26.1.2 23916 1ep3A 311 85.91 c.1.4.1 28597 2b61A 377 86.31 2id3A 225 87.02 a.4.1.9,a.121.1.1 137261,137262 2gzsA 278 88.14 2b9wA 424 88.17 2is6A 680 89.25 1bco 327 89.90