# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 4.96e-66 1tqnA 486 3.64e-65 a.104.1.1 107238 1r9oA 477 7.79e-65 a.104.1.1 104878 3c6gA 479 8.12e-65 2hi4A 495 5.56e-64 2ve3A 444 9.51e-64 1x8vA 455 7.43e-63 a.104.1.1 114968 1po5A 476 7.51e-63 a.104.1.1 94963 1h5zA 455 7.69e-63 a.104.1.1 90622 3b6hA 498 1.48e-62 3b98A 475 2.02e-62 1zo4A 473 7.50e-62 1jpzA 473 1.21e-61 a.104.1.1 67069 2cibA 455 2.91e-61 2iagA 482 1.05e-60 2ij2A 470 2.13e-60 a.104.1.1 137449 1izoA 417 5.89e-54 a.104.1.1 83851 2zbxA 412 1.94e-53 1gwiA 411 3.36e-53 a.104.1.1 76364 1yrcA 414 3.41e-53 a.104.1.1 123917 3bujA 397 4.22e-53 1uedA 406 2.76e-52 a.104.1.1 99256 1z8oA 404 4.20e-52 a.104.1.1 124722 1s1fA 406 8.85e-52 a.104.1.1 112008 3bdzA 397 1.00e-51 1cptA 428 1.64e-51 a.104.1.1 18968 2fr7A 412 1.89e-51 1t2bA 397 1.89e-51 1cpt 412 2.39e-51 1n97A 389 4.33e-51 a.104.1.1 80335 1odoA 408 6.60e-51 a.104.1.1 92783 1jfbA 404 1.83e-50 a.104.1.1 66624 1n40A 396 2.10e-50 a.104.1.1 79977 1q5dA 419 3.69e-50 a.104.1.1 95891 2z3tA 425 1.87e-49 2uuqA 414 3.62e-49 1lfkA 398 2.55e-48 a.104.1.1 77926 2rfbA 343 1.65e-46 1io7A 368 3.45e-42 a.104.1.1 18971 1gntA 553 1.998 e.26.1.1 70290 2b4uA 335 2.220 1wywA 230 2.533 1e1oA 504 3.938 b.40.4.1,d.104.1.1 25258,40714 2yveA 185 7.627 1gnlA 544 12.16 e.26.1.1 70287 1nd6A 354 13.37 c.60.1.2 80407 2e55A 208 16.09 2e1vA 454 19.26 2ovkC 159 20.60 1h3fA 432 21.67 c.26.1.1,d.66.1.4 76631,76632 1tzfA 259 27.72 c.68.1.13 107476 2yzhA 171 34.10 1ezwA 349 37.23 c.1.16.3 29558 1uhnA 189 37.76 a.39.1.5 99399 1t5oA 351 38.09 c.124.1.5 106459 1yp2A 451 42.80 b.81.1.4,c.68.1.6 123798,123799 3bosA 242 45.05 1u3dA 509 45.31 a.99.1.1,c.28.1.1 107638,107639 1t08A 519 45.54 a.118.1.1 112190 2yzvA 303 47.96 1qwoA 442 48.48 c.60.1.2 104620 2cvbA 188 48.57 c.47.1.10 130859 1xm9A 457 49.13 a.118.1.24 122142 2ct9A 208 49.19 3bjuA 521 49.89 1h5rA 293 51.58 c.68.1.6 65623 3crjA 199 52.53 1wstA 417 53.72 c.67.1.1 121244 2vg0A 227 55.59 2epjA 434 57.18 2cz1A 206 58.89 d.149.1.1 131033 3ladA 476 59.90 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2qkoA 215 61.20 2cwcA 303 61.38 3d1cA 369 61.80 2cftA 298 63.97 2v2fF 390 64.15 2e8vA 340 71.42 1z2zA 446 72.66 3c18A 290 73.01 2hhcA 330 75.63 1g8iA 190 76.13 a.39.1.5 60363 1wdcC 156 76.68 a.39.1.5 17317 1xfcA 384 77.80 1evyA 366 84.48 a.100.1.6,c.2.1.6 18811,30215 1ddzA 496 84.87 c.53.2.1,c.53.2.1 33372,33373 1xesA 413 85.25 1pmmA 466 85.33 c.67.1.6 94901 1wyuA 438 85.68 c.67.1.7 121452 1jqoA 970 85.75 c.1.12.3 77160 2c81A 418 86.14 2zfdA 226 86.46 1r0kA 388 87.35 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1mdoA 393 87.67 c.67.1.4 79013 2ot3A 274 89.75 a.222.1.1 139311