# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 4.24e-58 1tqnA 486 1.32e-57 a.104.1.1 107238 3c6gA 479 3.20e-57 1r9oA 477 1.07e-56 a.104.1.1 104878 2hi4A 495 2.47e-56 1x8vA 455 2.69e-56 a.104.1.1 114968 1po5A 476 3.21e-56 a.104.1.1 94963 1h5zA 455 3.47e-56 a.104.1.1 90622 3b98A 475 5.77e-56 2ve3A 444 9.69e-56 3b6hA 498 2.01e-55 1zo4A 473 7.21e-55 2cibA 455 8.73e-55 1jpzA 473 1.42e-54 a.104.1.1 67069 2iagA 482 1.22e-53 2ij2A 470 1.49e-53 a.104.1.1 137449 2zbxA 412 2.76e-48 1gwiA 411 1.62e-47 a.104.1.1 76364 1izoA 417 2.23e-47 a.104.1.1 83851 3bujA 397 3.66e-47 1yrcA 414 3.70e-47 a.104.1.1 123917 1s1fA 406 1.03e-46 a.104.1.1 112008 3bdzA 397 1.11e-46 1z8oA 404 1.27e-46 a.104.1.1 124722 1uedA 406 1.53e-46 a.104.1.1 99256 1t2bA 397 3.34e-46 1cpt 412 4.87e-46 1jfbA 404 5.14e-46 a.104.1.1 66624 2fr7A 412 5.78e-46 1n97A 389 1.03e-45 a.104.1.1 80335 1q5dA 419 1.27e-45 a.104.1.1 95891 1cptA 428 1.65e-45 a.104.1.1 18968 1n40A 396 5.41e-45 a.104.1.1 79977 2z3tA 425 6.19e-45 2uuqA 414 1.64e-44 1odoA 408 1.73e-44 a.104.1.1 92783 1lfkA 398 1.66e-43 a.104.1.1 77926 2rfbA 343 2.97e-41 1io7A 368 5.20e-39 a.104.1.1 18971 1e1oA 504 3.357 b.40.4.1,d.104.1.1 25258,40714 1knyA 253 3.393 a.24.16.1,d.218.1.1 75896,75897 2hhcA 330 4.317 1o69A 394 6.205 c.67.1.4 92560 2r4vA 247 9.667 2dbyA 368 10.46 1a9nB 96 12.24 d.58.7.1 39165 2gaeA 346 12.52 2b4uA 335 13.71 2go9A 161 15.12 1v0jA 399 15.67 1sxjE 354 16.02 a.80.1.1,c.37.1.20 106089,106090 2epjA 434 17.12 1nu4A 97 18.79 d.58.7.1 80731 3bjuA 521 19.70 1smdA 496 20.92 b.71.1.1,c.1.8.1 27768,28755 1tf1A 198 22.15 d.110.2.2 106826 1mdoA 393 22.51 c.67.1.4 79013 1h7eA 245 27.83 c.68.1.13 60717 1wzlA 585 27.99 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2qkoA 215 29.67 1h3nA 878 31.47 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 3bjnA 165 33.80 1yspA 181 34.88 1n2eA 300 35.69 c.26.1.4 85268 1pjrA 724 37.12 c.37.1.19,c.37.1.19 32391,32392 2e5iA 124 37.55 1ddzA 496 37.63 c.53.2.1,c.53.2.1 33372,33373 1gnlA 544 37.86 e.26.1.1 70287 2ae0X 345 41.63 3bf0A 593 48.70 1tzfA 259 49.11 c.68.1.13 107476 1w6kA 732 49.28 a.102.4.2,a.102.4.2 114271,114272 1t08A 519 50.55 a.118.1.1 112190 1gntA 553 50.70 e.26.1.1 70290 1h3fA 432 52.12 c.26.1.1,d.66.1.4 76631,76632 1qv1A 195 52.62 a.39.1.5 96347 1mkmA 249 53.32 a.4.5.33,d.110.2.2 79242,79243 2qalC 232 54.35 2ia2A 265 54.42 2b3fA 400 54.93 2bgxA 261 55.27 a.20.1.1,d.118.1.1 128504,128505 2ovkC 159 55.89 3bv0A 437 56.18 2gtqA 867 56.32 1bco 327 56.94 1a7jA 290 57.49 c.37.1.6 31952 2d6yA 202 57.79 a.4.1.9,a.121.1.1 131313,131314 1k0mA 241 57.81 a.45.1.1,c.47.1.5 67949,67950 2ct9A 208 58.78 2dexX 671 61.12 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 1oyzA 280 61.66 a.118.1.16 93775 2yveA 185 62.46 2fgeA 995 62.48 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 2qsxA 218 63.26 1twfA 1733 64.75 e.29.1.2 112725 1sxjC 340 65.88 a.80.1.1,c.37.1.20 106085,106086 2hraA 209 66.97 168lA 164 68.43 d.2.1.3 36975 3bjdA 332 70.82 2db0A 253 73.86 1bkfA 107 73.92 d.26.1.1 38382 1rwyA 109 74.55 a.39.1.4 98002 2scpA 174 74.77 a.39.1.5 17256 2cuyA 305 75.01 2q4uA 272 75.32 3d1cA 369 76.03 1pvaA 110 76.86 a.39.1.4 17207 3cbuA 214 77.18 2gnoA 305 77.23 a.80.1.1,c.37.1.20 135414,135415 1bkf 107 80.39 1n6aA 259 83.15 b.76.2.1,b.85.7.1 80121,80122 1xrkA 124 83.35 d.32.1.2 115881 2vqeC 239 84.97 2o99A 182 86.73 d.110.2.2 138952 1eemA 241 86.93 a.45.1.1,c.47.1.5 17717,33011 1jihA 531 88.17 d.240.1.1,e.8.1.7 90374,90375 2opoA 86 89.14 a.39.1.10 139209 1uhnA 189 89.45 a.39.1.5 99399