# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 7.23e-46 3c6gA 479 1.79e-45 1r9oA 477 9.39e-45 a.104.1.1 104878 1tqnA 486 6.75e-44 a.104.1.1 107238 2hi4A 495 3.22e-43 3b98A 475 5.04e-43 2ve3A 444 7.49e-43 3b6hA 498 1.04e-42 2iagA 482 1.64e-42 1po5A 476 3.56e-42 a.104.1.1 94963 1x8vA 455 5.92e-42 a.104.1.1 114968 1zo4A 473 9.75e-42 2ij2A 470 2.16e-41 a.104.1.1 137449 1h5zA 455 3.22e-41 a.104.1.1 90622 2cibA 455 1.43e-40 1jpzA 473 1.54e-40 a.104.1.1 67069 1t2bA 397 3.19e-37 1z8oA 404 1.04e-36 a.104.1.1 124722 2zbxA 412 3.33e-36 1cptA 428 4.07e-36 a.104.1.1 18968 3bdzA 397 5.17e-36 1gwiA 411 8.22e-36 a.104.1.1 76364 1cpt 412 1.03e-35 1jfbA 404 2.28e-35 a.104.1.1 66624 1yrcA 414 2.36e-35 a.104.1.1 123917 1odoA 408 4.05e-35 a.104.1.1 92783 1izoA 417 4.14e-35 a.104.1.1 83851 1q5dA 419 7.14e-35 a.104.1.1 95891 1s1fA 406 3.56e-34 a.104.1.1 112008 3bujA 397 3.64e-34 1n97A 389 6.89e-34 a.104.1.1 80335 1uedA 406 1.06e-33 a.104.1.1 99256 2z3tA 425 1.60e-33 2fr7A 412 5.84e-33 1n40A 396 1.41e-32 a.104.1.1 79977 2uuqA 414 3.92e-32 1lfkA 398 2.70e-30 a.104.1.1 77926 1io7A 368 6.04e-30 a.104.1.1 18971 2rfbA 343 1.56e-29 1n3lA 372 0.6730 c.26.1.1 79966 1lwjA 441 6.487 b.71.1.1,c.1.8.1 74303,74304 1fxjA 331 7.507 b.81.1.4,c.68.1.5 28062,34520 1wn1A 356 8.623 2cyaA 364 8.844 2nvwA 479 10.00 c.2.1.3,d.81.1.5 138665,138666 1ywfA 296 13.74 c.45.1.5 124144 1vkmA 297 14.88 c.138.1.1 108670 1kq3A 376 15.33 e.22.1.2 68790 1h3gA 601 15.37 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 3c8mA 331 15.42 2qjtA 352 16.65 1rwhA 757 16.88 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1xk7A 408 17.88 c.123.1.1 122071 1y791 680 17.98 1zjaA 557 18.40 2v0hA 456 18.70 2f2hA 773 20.30 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 2z4uA 261 20.57 1nd6A 354 20.94 c.60.1.2 80407 1smdA 496 23.55 b.71.1.1,c.1.8.1 27768,28755 2cycA 375 23.65 2zbwA 335 23.67 2b4uA 335 24.90 2fgeA 995 25.27 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1pmi 440 26.52 1j1qA 261 27.01 d.165.1.1 90768 2gzsA 278 27.18 1wzaA 488 27.32 b.71.1.1,c.1.8.1 121489,121490 1hv9A 456 27.53 b.81.1.4,c.68.1.5 28060,34518 2qptA 550 28.94 1o2dA 371 29.00 e.22.1.2 86591 1knwA 425 29.64 b.49.2.3,c.1.6.1 90969,90970 1xdiA 499 29.82 c.3.1.5,d.87.1.1 115160,115161 3d1cA 369 30.77 1mo9A 523 30.97 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1pmiA 440 31.87 b.82.1.3 28114 1ca1 370 32.08 2gp4A 628 34.39 c.8.2.2,d.334.1.1 135448,135449 1jv1A 505 35.22 c.68.1.5 71892 2gciA 360 37.36 c.123.1.1 134983 1ad2A 228 39.01 e.24.1.1 43353 2acvA 463 39.45 2blnA 305 39.55 b.46.1.1,c.65.1.1 128734,128735 2gh1A 301 40.61 c.66.1.49 135170 1nekA 588 41.29 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1bf2 750 42.08 1xo1A 291 42.25 a.60.7.1,c.120.1.2 18086,33356 1b9bA 255 42.49 c.1.1.1 28531 2fhfA 1083 43.41 1xzoA 174 43.70 c.47.1.10 122474 2fnaA 357 43.93 a.4.5.11,c.37.1.20 133809,133810 1f0lA 535 44.13 b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 2vc4A 267 44.19 1bco 327 45.34 2pgfA 371 45.68 2ckwA 515 46.68 2r9zA 463 46.74 2q3mA 326 46.97 c.37.1.5 139795 2oxaA 600 47.12 1ppjB 439 47.27 d.185.1.1,d.185.1.1 104254,104255 1jaeA 471 49.02 b.71.1.1,c.1.8.1 27773,28760 2gqwA 408 49.19 2gh9A 386 52.07 1vljA 407 53.04 e.22.1.2 108832 1x1iA 752 53.36 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1t08A 519 53.55 a.118.1.1 112190 2bh9A 489 53.90 2c1vA 338 54.01 2ejwA 332 55.15 1zmdA 474 55.22 1t7lA 766 56.03 2awiA 317 56.41 a.35.1.11,a.118.8.4 127435,127436 1x74A 360 57.34 c.123.1.1 121771 1p0iA 529 57.56 c.69.1.1 93867 1eljA 381 58.22 c.94.1.1 35791 2bwvA 440 60.17 c.55.2.1,d.127.1.1 129387,129388 1exnA 290 60.69 a.60.7.1,c.120.1.2 18088,33358 1wzlA 585 61.19 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 3grsA 478 63.29 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2bm0A 691 64.03 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1onrA 316 64.82 c.1.10.1 29169 1ca1A 370 65.61 a.124.1.1,b.12.1.3 19340,23648 1oaaA 259 65.68 c.2.1.2 29829 2e6fA 314 67.64 1j5sA 463 68.21 c.1.9.8 71580 1mrgA 263 68.65 d.165.1.1 42183 1tn6B 437 69.35 a.102.4.3 112528 1dceB 331 69.51 a.102.4.3 18872 1fnnA 389 70.11 a.4.5.11,c.37.1.20 16129,32426 1gesA 450 70.42 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2abqA 306 72.06 c.72.1.1 126528 1uwsA 489 74.68 c.1.8.4 108073 1wq3A 322 75.13 1cjcA 460 75.73 c.3.1.1,c.4.1.1 30319,30604 1bd0A 388 75.92 b.49.2.2,c.1.6.1 26480,28642 2o6lA 170 76.08 2pjoA 268 77.41 1mzhA 225 78.17 c.1.10.1 79698 1topA 162 78.38 a.39.1.5 17223 2cybA 323 79.39 1jihA 531 79.69 d.240.1.1,e.8.1.7 90374,90375 2o0tA 467 79.79 1vhqA 232 79.79 c.23.16.2 100696 2nvaA 372 80.21 1ehiA 377 80.34 c.30.1.2,d.142.1.1 31716,41484 1bf2A 750 80.35 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 2hmcA 344 80.52 1rqbA 539 81.13 a.5.7.2,c.1.10.5 105057,105058 2f31A 233 81.29 1hx0A 496 82.12 b.71.1.1,c.1.8.1 61346,61347 2axqA 467 83.33 2h9aB 310 85.02 2v3zA 440 85.27 2hnhA 910 86.56 1b5qA 472 86.64 c.3.1.2,d.16.1.5 30404,37968 1yi8A 351 87.41 1zcjA 463 88.05 1zk7A 467 88.17 1k55A 246 88.68 e.3.1.1 68156 1aocA 175 88.79 g.17.1.5 44817 1lrv 244 89.78