# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 3.72e-53 1tqnA 486 4.24e-53 a.104.1.1 107238 2hi4A 495 1.95e-52 1po5A 476 8.75e-52 a.104.1.1 94963 1zo4A 473 3.88e-51 2cibA 455 4.00e-51 1r9oA 477 1.03e-50 a.104.1.1 104878 3c6gA 479 5.65e-50 2ij2A 470 6.66e-50 a.104.1.1 137449 1h5zA 455 7.25e-50 a.104.1.1 90622 2iagA 482 9.09e-50 1u13A 455 3.71e-49 a.104.1.1 107578 1jpzA 473 6.31e-49 a.104.1.1 67069 1x8vA 455 7.85e-49 a.104.1.1 114968 2ve3A 444 8.29e-49 1bu7A 455 1.34e-48 a.104.1.1 18937 3b98A 475 1.85e-48 3b6hA 498 3.00e-48 1qmqA 414 9.09e-44 a.104.1.1 18907 1yrcA 414 1.51e-43 a.104.1.1 123917 1dz4A 414 1.66e-43 a.104.1.1 18903 1izoA 417 5.14e-43 a.104.1.1 83851 1n97A 389 5.52e-42 a.104.1.1 80335 1cpt 412 1.73e-41 1jipA 403 1.25e-40 a.104.1.1 66748 1jfbA 404 1.81e-40 a.104.1.1 66624 1z8oA 404 2.20e-40 a.104.1.1 124722 1f24A 402 2.87e-40 a.104.1.1 18953 1eupA 403 1.51e-39 a.104.1.1 18967 1q5dA 419 1.57e-39 a.104.1.1 95891 1s1fA 406 1.96e-39 a.104.1.1 112008 2d09A 407 2.24e-39 1uedA 406 3.23e-39 a.104.1.1 99256 1lfkA 398 4.66e-39 a.104.1.1 77926 1t2bA 397 4.68e-39 2d0eA 407 5.30e-39 1gwiA 411 3.15e-38 a.104.1.1 76364 1n40A 396 5.35e-38 a.104.1.1 79977 1odoA 408 6.43e-38 a.104.1.1 92783 2fr7A 412 1.47e-35 1io7A 368 6.11e-35 a.104.1.1 18971 1cptA 428 1.99e-34 a.104.1.1 18968 3bdzA 397 3.06e-32 2z3tA 425 6.44e-32 3bujA 397 7.58e-32 2zbxA 412 4.21e-31 2uuqA 414 7.96e-31 2rfbA 343 2.08e-29 2e5iA 124 1.153 1u5tA 233 1.344 a.4.5.54,a.4.5.54 107684,107685 1urnA 97 5.350 d.58.7.1 39153 1oiaA 95 7.080 d.58.7.1 87051 2pmvA 399 7.574 2adcA 229 9.329 d.58.7.1,d.58.7.1 126582,126583 1l3kA 196 11.55 d.58.7.1,d.58.7.1 73539,73540 1whxA 111 12.12 d.58.7.1 114654 2pe8A 105 12.38 1mp9A 198 17.22 d.129.1.1,d.129.1.1 91385,91386 1e1oA 504 17.98 b.40.4.1,d.104.1.1 25258,40714 2sqcA 631 18.73 a.102.4.2,a.102.4.2 18854,18855 2ditA 112 19.36 d.58.7.1 131533 2incA 491 19.67 a.25.1.2 137524 1nu4A 97 24.25 d.58.7.1 80731 3bcgA 215 26.48 2i57A 438 26.87 1h6kZ 98 26.97 d.58.7.1 60686 2g7gA 213 27.79 a.4.1.9,a.121.1.1 134732,134733 2c1lA 358 27.86 2qfjA 216 29.50 3bu3A 306 31.50 2f9dA 125 31.54 d.58.7.1 133159 1ha1 184 32.26 1j79A 347 32.49 c.1.9.4 62675 1s0pA 176 33.39 a.192.1.1 98300 2dorA 311 33.45 c.1.4.1 28593 1umpA 631 33.68 a.102.4.2,a.102.4.2 99619,99620 2dg7A 195 34.02 8abp 306 34.42 3bgaA 1010 36.42 2adbA 148 38.99 d.58.7.1 126581 2g3bA 208 40.65 a.4.1.9,a.121.1.1 134558,134559 1g94A 448 40.68 b.71.1.1,c.1.8.1 65169,65170 1is1A 185 40.93 d.67.3.1 83704 1juvA 193 41.09 c.71.1.1 90912 1u6bA 98 41.38 d.58.7.1 107703 1j5sA 463 43.38 c.1.9.8 71580 1iugA 352 44.64 c.67.1.3 90699 1t56A 216 44.76 a.4.1.9,a.121.1.1 106428,106429 2no4A 240 46.83 2o8nA 265 48.58 2hoqA 241 49.81 1b0nA 111 50.46 a.34.1.1,a.35.1.3 17001,17064 1h7eA 245 51.08 c.68.1.13 60717 3begB 115 51.33 1u7kA 131 52.32 a.73.1.1 113087 2d5rB 116 54.75 2i10A 202 54.91 a.4.1.9,a.121.1.1 136960,136961 1sgmA 191 55.71 a.4.1.9,a.121.1.1 105537,105538 2iekA 200 55.79 2uxuA 210 57.66 2dhxA 104 59.99 2iyvA 184 61.44 c.37.1.2 137812 2rhmA 193 63.79 1qyiA 384 64.58 c.108.1.13 96595 2ioyA 283 64.66 2rajA 392 66.11 1fxlA 167 66.17 d.58.7.1,d.58.7.1 39183,39184 1rk8A 165 66.38 d.58.7.1 97603 1h7wA 1025 68.25 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 3bhqA 211 68.73 2ifqA 105 73.07 c.47.1.1 137343 1ek8A 185 74.95 d.67.3.1 59444 2fx0A 201 76.82 a.4.1.9,a.121.1.1 134269,134270 2qzvA 873 77.94 3crjA 199 79.07 1oo0B 110 80.00 d.58.7.1 87183 2hyjA 200 80.27 3bqoA 211 82.18 1d3gA 367 83.03 c.1.4.1 28600 2hcfA 234 83.44 c.108.1.6 136333 2q3wA 111 84.69 b.33.1.1 139813 2p3eA 420 84.73 1tiwA 602 87.01 a.176.1.1,c.1.23.2 112430,112431 2z15A 130 87.21 1vicA 262 88.13 c.68.1.13 100756