# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tqnA	486	7.40e-48	a.104.1.1	107238
2fdvA	476	1.07e-47		
2hi4A	495	2.51e-47		
1po5A	476	1.25e-46	a.104.1.1	94963
1zo4A	473	2.70e-46		
2cibA	455	2.96e-46		
1r9oA	477	1.08e-45	a.104.1.1	104878
2ij2A	470	1.72e-45	a.104.1.1	137449
1h5zA	455	2.63e-45	a.104.1.1	90622
1u13A	455	8.90e-45	a.104.1.1	107578
3c6gA	479	9.09e-45		
2iagA	482	1.04e-44		
1x8vA	455	1.22e-44	a.104.1.1	114968
1jpzA	473	2.96e-44	a.104.1.1	67069
1bu7A	455	3.97e-44	a.104.1.1	18937
2ve3A	444	5.01e-44		
3b98A	475	1.99e-43		
3b6hA	498	2.18e-43		
1qmqA	414	2.00e-39	a.104.1.1	18907
1yrcA	414	4.83e-39	a.104.1.1	123917
1dz4A	414	5.35e-39	a.104.1.1	18903
1izoA	417	1.27e-38	a.104.1.1	83851
1n97A	389	2.61e-38	a.104.1.1	80335
1cpt	412	1.70e-37		
1jipA	403	1.51e-36	a.104.1.1	66748
1jfbA	404	1.58e-36	a.104.1.1	66624
1z8oA	404	3.60e-36	a.104.1.1	124722
1f24A	402	4.19e-36	a.104.1.1	18953
1eupA	403	8.75e-36	a.104.1.1	18967
1q5dA	419	1.26e-35	a.104.1.1	95891
2d09A	407	1.96e-35		
1uedA	406	2.81e-35	a.104.1.1	99256
1t2bA	397	2.97e-35		
2d0eA	407	3.02e-35		
1lfkA	398	4.35e-35	a.104.1.1	77926
1s1fA	406	8.03e-35	a.104.1.1	112008
1gwiA	411	1.34e-34	a.104.1.1	76364
1odoA	408	2.14e-34	a.104.1.1	92783
1n40A	396	6.64e-34	a.104.1.1	79977
2fr7A	412	1.19e-31		
1io7A	368	3.10e-31	a.104.1.1	18971
1cptA	428	9.69e-31	a.104.1.1	18968
3bdzA	397	4.90e-29		
3bujA	397	1.09e-28		
2z3tA	425	1.36e-28		
2zbxA	412	5.72e-28		
2uuqA	414	1.50e-27		
2rfbA	343	2.61e-26		
1u5tA	233	10.30	a.4.5.54,a.4.5.54	107684,107685
1oiaA	95	10.48	d.58.7.1	87051
1urnA	97	10.99	d.58.7.1	39153
2e5iA	124	12.48		
2pmvA	399	12.58		
1mp9A	198	18.45	d.129.1.1,d.129.1.1	91385,91386
1l3kA	196	19.67	d.58.7.1,d.58.7.1	73539,73540
1whxA	111	20.64	d.58.7.1	114654
1h7eA	245	21.89	c.68.1.13	60717
3bgaA	1010	24.10		
2adcA	229	27.46	d.58.7.1,d.58.7.1	126582,126583
2c1lA	358	28.01		
1h7wA	1025	28.51	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
1nu4A	97	30.14	d.58.7.1	80731
1umpA	631	32.62	a.102.4.2,a.102.4.2	99619,99620
2g7gA	213	34.34	a.4.1.9,a.121.1.1	134732,134733
1e1oA	504	34.44	b.40.4.1,d.104.1.1	25258,40714
1is1A	185	35.85	d.67.3.1	83704
2sqcA	631	36.59	a.102.4.2,a.102.4.2	18854,18855
3crjA	199	36.75		
1t5jA	313	38.34	a.209.1.1	99125
8abp	306	39.78		
3b81A	203	40.90		
1ezvA	430	41.43	d.185.1.1,d.185.1.1	59541,59542
2ot3A	274	44.48	a.222.1.1	139311
2dg7A	195	44.64		
1u7kA	131	45.50	a.73.1.1	113087
2pe8A	105	46.06		
1j79A	347	47.90	c.1.9.4	62675
2rajA	392	48.86		
1t56A	216	49.47	a.4.1.9,a.121.1.1	106428,106429
2hf2A	283	53.03		
1ek8A	185	53.66	d.67.3.1	59444
2ibdA	204	53.96		
1ha1	184	55.04		
1u6zA	513	56.40	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
2g3bA	208	58.60	a.4.1.9,a.121.1.1	134558,134559
2i57A	438	59.92		
2zb9A	214	60.66		
1sgmA	191	60.74	a.4.1.9,a.121.1.1	105537,105538
3bu3A	306	62.60		
2ejwA	332	64.69		
2ioyA	283	65.09		
2citA	282	65.27	c.1.8.3	130499
3bhqA	211	65.41		
1qvtA	194	65.65	a.4.1.9,a.121.1.1	104602,104603
2qahA	303	65.89		
2f9dA	125	66.06	d.58.7.1	133159
2yvwA	425	66.69		
1tl9A	339	67.00	d.3.1.3	112505
1iugA	352	67.14	c.67.1.3	90699
2qzvA	873	67.48		
3bcgA	215	68.95		
1ppjB	439	69.56	d.185.1.1,d.185.1.1	104254,104255
2no4A	240	70.49		
2ditA	112	70.94	d.58.7.1	131533
2hoqA	241	71.87		
2incA	491	73.89	a.25.1.2	137524
2uxuA	210	73.92		
2dorA	311	75.82	c.1.4.1	28593
2qfjA	216	78.28		
2q3wA	111	79.34	b.33.1.1	139813
3bq9A	460	79.66		
1juvA	193	82.25	c.71.1.1	90912
2d5rB	116	84.66		
3brsA	289	84.72		
2po1B	277	85.30		
1mi3A	322	87.66	c.1.7.1	91274
1tlfA	301	89.13	c.93.1.1	35687