# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 7.81e-54 1tqnA 486 1.49e-53 a.104.1.1 107238 2hi4A 495 1.69e-53 1po5A 476 1.08e-52 a.104.1.1 94963 1zo4A 473 1.51e-52 1r9oA 477 6.29e-52 a.104.1.1 104878 2cibA 455 1.74e-51 3c6gA 479 5.08e-51 2ij2A 470 1.46e-50 a.104.1.1 137449 1bu7A 455 1.59e-50 a.104.1.1 18937 1h5zA 455 2.15e-50 a.104.1.1 90622 1jpzA 473 2.39e-50 a.104.1.1 67069 2iagA 482 3.70e-50 1u13A 455 7.14e-50 a.104.1.1 107578 1x8vA 455 1.10e-49 a.104.1.1 114968 2ve3A 444 2.48e-49 3b98A 475 7.44e-49 3b6hA 498 1.02e-48 1qmqA 414 2.84e-44 a.104.1.1 18907 1yrcA 414 9.40e-44 a.104.1.1 123917 1dz4A 414 2.97e-43 a.104.1.1 18903 1izoA 417 1.06e-42 a.104.1.1 83851 1n97A 389 1.99e-42 a.104.1.1 80335 1cpt 412 1.21e-41 1jipA 403 7.46e-41 a.104.1.1 66748 1z8oA 404 2.71e-40 a.104.1.1 124722 1jfbA 404 3.24e-40 a.104.1.1 66624 2d0eA 407 5.84e-40 2d09A 407 6.84e-40 1f24A 402 7.85e-40 a.104.1.1 18953 1q5dA 419 1.32e-39 a.104.1.1 95891 1eupA 403 2.15e-39 a.104.1.1 18967 1t2bA 397 2.66e-39 1uedA 406 2.85e-39 a.104.1.1 99256 1s1fA 406 3.18e-39 a.104.1.1 112008 1lfkA 398 4.11e-39 a.104.1.1 77926 1gwiA 411 2.20e-38 a.104.1.1 76364 1odoA 408 8.59e-38 a.104.1.1 92783 1n40A 396 1.20e-37 a.104.1.1 79977 2fr7A 412 4.57e-36 1io7A 368 9.90e-35 a.104.1.1 18971 1cptA 428 6.94e-34 a.104.1.1 18968 3bdzA 397 1.52e-32 3bujA 397 5.35e-32 2z3tA 425 2.04e-31 2uuqA 414 2.08e-31 2zbxA 412 6.78e-31 2rfbA 343 3.75e-29 1ohvA 472 1.389 c.67.1.4 93031 2incA 491 1.981 a.25.1.2 137524 3bu3A 306 2.102 1j79A 347 3.891 c.1.9.4 62675 3bmaA 407 5.011 1hr6B 443 6.413 d.185.1.1,d.185.1.1 61166,61167 2c0cA 362 7.423 1kqfA 1015 10.53 b.52.2.2,c.81.1.1 72871,72872 1e1oA 504 10.57 b.40.4.1,d.104.1.1 25258,40714 1h3gA 601 11.12 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1cs0A 1073 11.59 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1hv9A 456 13.73 b.81.1.4,c.68.1.5 28060,34518 1satA 471 14.02 b.80.7.1,d.92.1.6 28014,40300 2hoqA 241 16.81 2i57A 438 17.65 1gl6A 436 18.10 c.37.1.11 70259 2c1lA 358 20.06 1mp9A 198 20.27 d.129.1.1,d.129.1.1 91385,91386 2hcfA 234 22.76 c.108.1.6 136333 1qyiA 384 23.67 c.108.1.13 96595 1zu0A 529 24.29 1l3kA 196 24.50 d.58.7.1,d.58.7.1 73539,73540 1l3sA 580 24.78 c.55.3.5,e.8.1.1 84521,84522 2e5iA 124 24.86 8abp 306 25.82 2cf5A 357 26.73 1qmgA 524 29.24 a.100.1.2,c.2.1.6 18785,30182 2ffuA 501 32.85 1lqaA 346 33.53 c.1.7.1 84674 3bjuA 521 34.03 1oiaA 95 34.66 d.58.7.1 87051 1cjxA 357 36.33 d.32.1.3,d.32.1.3 38516,38517 2no4A 240 36.52 2go3A 267 37.89 d.14.1.7,d.14.1.7 135422,135423 2q7eA 291 38.04 1urnA 97 38.11 d.58.7.1 39153 2p36A 335 38.21 2sqcA 631 38.27 a.102.4.2,a.102.4.2 18854,18855 1nw1A 429 38.82 d.144.1.8 86286 1qnaA 200 39.00 d.129.1.1,d.129.1.1 41226,41227 1gnd 447 39.52 2j7nA 1022 40.38 1is1A 185 40.66 d.67.3.1 83704 2j6vA 301 41.98 1u5tA 233 43.08 a.4.5.54,a.4.5.54 107684,107685 1g97A 459 43.44 b.81.1.4,c.68.1.5 60394,60395 2a84A 300 43.70 c.26.1.4 126389 1ppjB 439 44.34 d.185.1.1,d.185.1.1 104254,104255 2hhvA 580 48.69 c.55.3.5,e.8.1.1 136514,136515 2v7pA 310 49.11 1nd4A 264 49.80 d.144.1.6 91815 2qr4A 587 50.71 1b65A 375 51.24 d.154.1.1 42020 1g67A 225 52.37 c.1.3.1 60311 7taa 478 52.78 1rpa 342 53.43 2z26A 347 53.47 2p3eA 420 54.79 2o2kA 355 55.04 1ir3A 306 55.30 d.144.1.7 41702 1umpA 631 55.31 a.102.4.2,a.102.4.2 99619,99620 1ek8A 185 55.77 d.67.3.1 59444 1a99A 344 56.88 c.94.1.1 35812 1ha1 184 57.33 2ff4A 388 58.37 a.4.6.1,a.118.8.3,b.26.1.2 133367,133368,133369 3bq9A 460 58.70 1w6kA 732 59.58 a.102.4.2,a.102.4.2 114271,114272 1lrzA 426 59.68 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2btzA 394 61.49 2v3gA 283 61.65 2eg6A 347 61.81 1ak0A 270 61.97 a.124.1.2 19345 2iekA 200 62.41 2dg7A 195 65.61 2pnkA 428 65.66 1hm9A 468 66.40 b.81.1.4,c.68.1.5 65866,65867 2g3bA 208 67.27 a.4.1.9,a.121.1.1 134558,134559 2ot3A 274 69.95 a.222.1.1 139311 2ex0A 399 70.24 c.87.1.9 132494 2gkmA 136 70.30 1qwgA 251 70.86 c.1.27.1 96473 1hk8A 605 70.97 c.7.1.3 83540 2h0rA 216 71.76 1lucB 324 72.03 c.1.16.1 29548 1h7eA 245 72.06 c.68.1.13 60717 1kwfA 363 72.31 a.102.1.2 73078 2pe8A 105 73.00 1yp2A 451 73.18 b.81.1.4,c.68.1.6 123798,123799 2a74A 643 74.59 1u3dA 509 75.91 a.99.1.1,c.28.1.1 107638,107639 2g7gA 213 79.15 a.4.1.9,a.121.1.1 134732,134733 1vicA 262 79.84 c.68.1.13 100756 2r6gF 514 80.36 2citA 282 81.01 c.1.8.3 130499 1yw1A 442 81.07 c.1.16.4 124130 1np7A 489 82.33 a.99.1.1,c.28.1.1 80677,80678 2vebA 195 83.17 2ioyA 283 83.49 2z8xA 617 85.48 1mi3A 322 85.87 c.1.7.1 91274 2guyA 478 86.36 b.71.1.1,c.1.8.1 135754,135755 1f0jA 377 86.65 a.211.1.2 19346 1mp4A 292 87.44 c.68.1.6 79376 2d5wA 603 88.70 1nu4A 97 89.26 d.58.7.1 80731 1ia6A 441 89.36 a.102.1.2 76738 2pljA 419 89.78 1tjyA 316 89.98 c.93.1.1 107062