# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 6.17e-60 a.104.1.1 107238 2fdvA 476 1.33e-59 2hi4A 495 3.37e-59 1po5A 476 3.42e-58 a.104.1.1 94963 2cibA 455 1.15e-57 1zo4A 473 1.73e-57 1r9oA 477 4.33e-57 a.104.1.1 104878 2iagA 482 2.79e-56 1h5zA 455 3.33e-56 a.104.1.1 90622 3c6gA 479 5.63e-56 2ij2A 470 7.00e-56 a.104.1.1 137449 1u13A 455 1.78e-55 a.104.1.1 107578 2ve3A 444 3.87e-55 1jpzA 473 6.32e-55 a.104.1.1 67069 1x8vA 455 6.41e-55 a.104.1.1 114968 3b98A 475 7.21e-55 3b6hA 498 1.77e-54 1bu7A 455 2.07e-54 a.104.1.1 18937 1qmqA 414 6.50e-49 a.104.1.1 18907 1yrcA 414 6.55e-49 a.104.1.1 123917 1dz4A 414 1.19e-48 a.104.1.1 18903 1izoA 417 4.33e-48 a.104.1.1 83851 1n97A 389 1.81e-47 a.104.1.1 80335 1cpt 412 4.28e-47 1jipA 403 3.16e-45 a.104.1.1 66748 1jfbA 404 4.92e-45 a.104.1.1 66624 1z8oA 404 5.29e-45 a.104.1.1 124722 1f24A 402 8.09e-45 a.104.1.1 18953 1q5dA 419 1.72e-44 a.104.1.1 95891 2d09A 407 3.93e-44 1s1fA 406 4.91e-44 a.104.1.1 112008 1eupA 403 5.92e-44 a.104.1.1 18967 1lfkA 398 8.30e-44 a.104.1.1 77926 2d0eA 407 1.10e-43 1uedA 406 1.18e-43 a.104.1.1 99256 1t2bA 397 2.19e-43 1gwiA 411 2.17e-42 a.104.1.1 76364 1odoA 408 4.16e-42 a.104.1.1 92783 1n40A 396 8.31e-42 a.104.1.1 79977 2fr7A 412 1.03e-39 1io7A 368 1.34e-38 a.104.1.1 18971 1cptA 428 2.18e-38 a.104.1.1 18968 3bdzA 397 2.08e-35 2z3tA 425 4.73e-35 3bujA 397 5.16e-35 2zbxA 412 5.99e-34 2uuqA 414 6.49e-34 2rfbA 343 2.25e-32 1j79A 347 4.079 c.1.9.4 62675 2e5iA 124 4.277 1u5tA 233 4.655 a.4.5.54,a.4.5.54 107684,107685 1urnA 97 11.81 d.58.7.1 39153 1oiaA 95 14.51 d.58.7.1 87051 2pmvA 399 16.37 2hoqA 241 16.44 2no4A 240 16.56 1mp9A 198 16.88 d.129.1.1,d.129.1.1 91385,91386 2qzvA 873 17.08 1e1oA 504 22.18 b.40.4.1,d.104.1.1 25258,40714 1qyiA 384 23.77 c.108.1.13 96595 2sqcA 631 25.83 a.102.4.2,a.102.4.2 18854,18855 1h7wA 1025 26.06 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1l3kA 196 28.09 d.58.7.1,d.58.7.1 73539,73540 2incA 491 29.18 a.25.1.2 137524 2c1lA 358 32.63 1iugA 352 33.18 c.67.1.3 90699 3bgaA 1010 34.05 3bu3A 306 34.33 2z26A 347 34.41 2pe8A 105 35.41 1wmjA 130 36.14 2uxqA 402 36.45 1is1A 185 37.52 d.67.3.1 83704 2g7gA 213 38.74 a.4.1.9,a.121.1.1 134732,134733 2i57A 438 42.12 1whxA 111 43.31 d.58.7.1 114654 1t70A 255 43.79 d.159.1.9 112275 1nu4A 97 44.75 d.58.7.1 80731 1umpA 631 44.93 a.102.4.2,a.102.4.2 99619,99620 1ek8A 185 45.22 d.67.3.1 59444 2rajA 392 45.79 2adcA 229 50.23 d.58.7.1,d.58.7.1 126582,126583 1b0nA 111 50.64 a.34.1.1,a.35.1.3 17001,17064 1lqtA 456 51.04 c.3.1.1,c.4.1.1 74198,74199 3bcgA 215 52.62 2de3A 365 53.07 1nd4A 264 53.30 d.144.1.6 91815 1w6kA 732 54.12 a.102.4.2,a.102.4.2 114271,114272 2yvwA 425 55.21 2o8nA 265 62.11 2dvtA 327 62.51 c.1.9.15 131793 2ditA 112 62.62 d.58.7.1 131533 1h7eA 245 64.79 c.68.1.13 60717 1u7kA 131 64.80 a.73.1.1 113087 1juvA 193 66.30 c.71.1.1 90912 1u6bA 98 68.97 d.58.7.1 107703 1rrvA 416 69.11 c.87.1.5 105083 1vicA 262 69.28 c.68.1.13 100756 2citA 282 69.74 c.1.8.3 130499 1ezvA 430 71.65 d.185.1.1,d.185.1.1 59541,59542 8abp 306 71.83 2qahA 303 73.10 1mi3A 322 73.70 c.1.7.1 91274 1sfp 114 76.16 1s0pA 176 76.45 a.192.1.1 98300 2f9dA 125 77.33 d.58.7.1 133159 1tuoA 464 77.93 2uxuA 210 78.86 2ve7C 250 79.36 2ox1A 196 79.42 3bqoA 211 80.09 1t56A 216 80.83 a.4.1.9,a.121.1.1 106428,106429 2g3bA 208 81.17 a.4.1.9,a.121.1.1 134558,134559 2hcfA 234 81.39 c.108.1.6 136333 2iekA 200 82.86 2ioyA 283 87.82 2dg7A 195 87.87 2ax3A 502 89.18 c.72.1.4,c.104.1.1 127477,127478 2hszA 243 89.42 c.108.1.6 136726 3cawA 330 89.66 1g67A 225 89.92 c.1.3.1 60311