# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 8.19e-56 a.104.1.1 107238 2fdvA 476 1.83e-55 2hi4A 495 2.29e-55 1po5A 476 1.74e-54 a.104.1.1 94963 1zo4A 473 1.06e-53 2cibA 455 1.22e-53 1r9oA 477 3.54e-53 a.104.1.1 104878 2ij2A 470 2.12e-52 a.104.1.1 137449 3c6gA 479 2.14e-52 1h5zA 455 2.15e-52 a.104.1.1 90622 2iagA 482 2.51e-52 1u13A 455 1.04e-51 a.104.1.1 107578 2ve3A 444 1.81e-51 1x8vA 455 2.44e-51 a.104.1.1 114968 1jpzA 473 2.99e-51 a.104.1.1 67069 3b98A 475 5.42e-51 1bu7A 455 6.40e-51 a.104.1.1 18937 3b6hA 498 1.48e-50 1qmqA 414 1.34e-45 a.104.1.1 18907 1yrcA 414 2.26e-45 a.104.1.1 123917 1dz4A 414 2.31e-45 a.104.1.1 18903 1izoA 417 6.77e-45 a.104.1.1 83851 1n97A 389 1.39e-44 a.104.1.1 80335 1cpt 412 1.10e-43 1jfbA 404 3.09e-42 a.104.1.1 66624 1jipA 403 3.82e-42 a.104.1.1 66748 1z8oA 404 6.54e-42 a.104.1.1 124722 1f24A 402 7.01e-42 a.104.1.1 18953 1q5dA 419 1.62e-41 a.104.1.1 95891 2d09A 407 4.37e-41 1eupA 403 5.01e-41 a.104.1.1 18967 1s1fA 406 6.24e-41 a.104.1.1 112008 1uedA 406 7.14e-41 a.104.1.1 99256 1lfkA 398 7.98e-41 a.104.1.1 77926 2d0eA 407 9.11e-41 1t2bA 397 1.77e-40 1gwiA 411 4.97e-40 a.104.1.1 76364 1odoA 408 1.31e-39 a.104.1.1 92783 1n40A 396 2.11e-39 a.104.1.1 79977 2fr7A 412 5.18e-37 1io7A 368 2.48e-36 a.104.1.1 18971 1cptA 428 5.53e-36 a.104.1.1 18968 3bdzA 397 3.86e-33 2z3tA 425 5.35e-33 3bujA 397 9.25e-33 2uuqA 414 4.24e-32 2zbxA 412 7.68e-32 2rfbA 343 1.40e-30 2pmvA 399 6.030 1u5tA 233 7.679 a.4.5.54,a.4.5.54 107684,107685 1urnA 97 8.795 d.58.7.1 39153 1oiaA 95 9.407 d.58.7.1 87051 1is1A 185 12.99 d.67.3.1 83704 2hoqA 241 13.85 1iugA 352 14.23 c.67.1.3 90699 2je8A 848 14.64 1mp9A 198 15.38 d.129.1.1,d.129.1.1 91385,91386 1l3kA 196 15.79 d.58.7.1,d.58.7.1 73539,73540 2e5iA 124 16.01 2i57A 438 19.11 1e1oA 504 19.21 b.40.4.1,d.104.1.1 25258,40714 1ek8A 185 21.18 d.67.3.1 59444 2no4A 240 22.22 1qyiA 384 25.63 c.108.1.13 96595 1h7wA 1025 27.58 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2sqcA 631 31.86 a.102.4.2,a.102.4.2 18854,18855 3bgaA 1010 33.40 1j79A 347 35.78 c.1.9.4 62675 2uxuA 210 36.28 1tvkA 440 37.53 c.32.1.1,d.79.2.1 107362,107363 3bcgA 215 38.07 1nu4A 97 40.36 d.58.7.1 80731 1wmjA 130 41.94 1whxA 111 43.28 d.58.7.1 114654 2dg7A 195 45.23 1s0pA 176 46.67 a.192.1.1 98300 2ditA 112 48.90 d.58.7.1 131533 2g7gA 213 48.90 a.4.1.9,a.121.1.1 134732,134733 2hcfA 234 49.38 c.108.1.6 136333 1h7eA 245 49.77 c.68.1.13 60717 2pe8A 105 50.90 2c1lA 358 53.05 3bqoA 211 53.41 1g97A 459 53.96 b.81.1.4,c.68.1.5 60394,60395 1iseA 185 55.29 d.67.3.1 90691 1w6kA 732 56.72 a.102.4.2,a.102.4.2 114271,114272 2incA 491 57.22 a.25.1.2 137524 1u7kA 131 57.61 a.73.1.1 113087 1umpA 631 58.42 a.102.4.2,a.102.4.2 99619,99620 2o8nA 265 59.00 8abp 306 59.01 1d3gA 367 59.44 c.1.4.1 28600 2ts1 419 59.59 1ep3A 311 60.68 c.1.4.1 28597 1b0nA 111 60.93 a.34.1.1,a.35.1.3 17001,17064 1l3sA 580 62.52 c.55.3.5,e.8.1.1 84521,84522 1wqgA 185 63.92 2ox1A 196 64.17 1ha1 184 64.69 1u6bA 98 64.97 d.58.7.1 107703 3bhqA 211 68.38 2rajA 392 68.58 2qahA 303 68.70 2g3bA 208 69.18 a.4.1.9,a.121.1.1 134558,134559 1g67A 225 71.19 c.1.3.1 60311 2f9dA 125 71.95 d.58.7.1 133159 1mtyD 512 72.00 a.25.1.2 16742 2q3wA 111 72.65 b.33.1.1 139813 3crjA 199 73.65 2dorA 311 73.99 c.1.4.1 28593 2qzvA 873 76.33 2hszA 243 77.09 c.108.1.6 136726 1mi3A 322 80.05 c.1.7.1 91274 2yvwA 425 80.13 2rhmA 193 80.95 3bu3A 306 81.66 1h6kZ 98 81.77 d.58.7.1 60686 2p3eA 420 81.90 1t56A 216 82.54 a.4.1.9,a.121.1.1 106428,106429 2iyvA 184 83.74 c.37.1.2 137812 1g94A 448 84.73 b.71.1.1,c.1.8.1 65169,65170 3begB 115 85.35 2b7kA 200 86.10 c.47.1.10 128042 2nyvA 222 86.60 1eudA 311 88.30 c.2.1.8,c.23.4.1 30312,31140 1ezvA 430 88.94 d.185.1.1,d.185.1.1 59541,59542