# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 2.97e-56 a.104.1.1 107238 2fdvA 476 6.77e-56 2hi4A 495 2.29e-55 1po5A 476 1.16e-54 a.104.1.1 94963 1zo4A 473 5.10e-54 2cibA 455 6.68e-54 1r9oA 477 1.39e-53 a.104.1.1 104878 3c6gA 479 8.37e-53 2ij2A 470 8.73e-53 a.104.1.1 137449 1h5zA 455 1.31e-52 a.104.1.1 90622 2iagA 482 1.56e-52 1u13A 455 5.77e-52 a.104.1.1 107578 1jpzA 473 1.01e-51 a.104.1.1 67069 2ve3A 444 1.07e-51 1x8vA 455 1.41e-51 a.104.1.1 114968 3b98A 475 2.19e-51 1bu7A 455 2.91e-51 a.104.1.1 18937 3b6hA 498 6.45e-51 1qmqA 414 3.85e-46 a.104.1.1 18907 1yrcA 414 5.89e-46 a.104.1.1 123917 1dz4A 414 7.99e-46 a.104.1.1 18903 1izoA 417 2.60e-45 a.104.1.1 83851 1n97A 389 4.97e-45 a.104.1.1 80335 1cpt 412 3.29e-44 1jfbA 404 1.41e-42 a.104.1.1 66624 1jipA 403 2.05e-42 a.104.1.1 66748 1f24A 402 2.84e-42 a.104.1.1 18953 1z8oA 404 3.50e-42 a.104.1.1 124722 1q5dA 419 8.50e-42 a.104.1.1 95891 1eupA 403 1.76e-41 a.104.1.1 18967 1lfkA 398 1.78e-41 a.104.1.1 77926 2d09A 407 2.26e-41 1uedA 406 3.20e-41 a.104.1.1 99256 1s1fA 406 3.50e-41 a.104.1.1 112008 1t2bA 397 3.53e-41 2d0eA 407 5.38e-41 1gwiA 411 2.89e-40 a.104.1.1 76364 1odoA 408 6.10e-40 a.104.1.1 92783 1n40A 396 1.57e-39 a.104.1.1 79977 2fr7A 412 3.69e-37 1io7A 368 8.39e-37 a.104.1.1 18971 1cptA 428 3.66e-36 a.104.1.1 18968 3bdzA 397 9.26e-34 3bujA 397 1.57e-33 2z3tA 425 3.18e-33 2uuqA 414 4.36e-32 2zbxA 412 4.68e-32 2rfbA 343 8.76e-31 1u5tA 233 3.889 a.4.5.54,a.4.5.54 107684,107685 2e5iA 124 4.247 1urnA 97 5.799 d.58.7.1 39153 1mp9A 198 6.593 d.129.1.1,d.129.1.1 91385,91386 2pmvA 399 6.934 1oiaA 95 7.157 d.58.7.1 87051 1l3kA 196 11.56 d.58.7.1,d.58.7.1 73539,73540 1whxA 111 14.50 d.58.7.1 114654 2adcA 229 18.60 d.58.7.1,d.58.7.1 126582,126583 1nu4A 97 18.66 d.58.7.1 80731 1e1oA 504 20.13 b.40.4.1,d.104.1.1 25258,40714 2hoqA 241 20.21 2ditA 112 22.27 d.58.7.1 131533 2pe8A 105 23.15 3bgaA 1010 25.50 1u6bA 98 26.15 d.58.7.1 107703 2sqcA 631 26.37 a.102.4.2,a.102.4.2 18854,18855 1u7kA 131 26.92 a.73.1.1 113087 2no4A 240 27.90 1iugA 352 30.72 c.67.1.3 90699 1qyiA 384 31.03 c.108.1.13 96595 2i57A 438 33.66 1is1A 185 36.86 d.67.3.1 83704 1ek8A 185 37.21 d.67.3.1 59444 1h7wA 1025 37.86 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2incA 491 41.18 a.25.1.2 137524 2uxuA 210 41.59 1ha1 184 41.95 2uxqA 402 42.37 2q3wA 111 43.34 b.33.1.1 139813 2c1lA 358 43.53 1umpA 631 43.81 a.102.4.2,a.102.4.2 99619,99620 1s0pA 176 44.74 a.192.1.1 98300 3bcgA 215 45.22 2g3bA 208 45.31 a.4.1.9,a.121.1.1 134558,134559 1b0nA 111 48.31 a.34.1.1,a.35.1.3 17001,17064 8abp 306 49.65 1h6kZ 98 50.93 d.58.7.1 60686 1t56A 216 51.05 a.4.1.9,a.121.1.1 106428,106429 2je8A 848 51.12 1j79A 347 53.34 c.1.9.4 62675 3bu3A 306 53.38 2iyvA 184 53.66 c.37.1.2 137812 2o8nA 265 54.57 1wmjA 130 56.43 2d5rB 116 57.16 2rajA 392 57.44 2hcfA 234 57.46 c.108.1.6 136333 1h7eA 245 59.71 c.68.1.13 60717 2ifqA 105 61.26 c.47.1.1 137343 1nd4A 264 61.67 d.144.1.6 91815 2p3eA 420 61.90 1t70A 255 63.01 d.159.1.9 112275 2ejwA 332 65.12 1tvkA 440 66.80 c.32.1.1,d.79.2.1 107362,107363 3crjA 199 67.20 1qnaA 200 68.14 d.129.1.1,d.129.1.1 41226,41227 3bhqA 211 69.45 2rhmA 193 70.10 2p36A 335 70.90 2g7gA 213 73.69 a.4.1.9,a.121.1.1 134732,134733 2f9dA 125 74.01 d.58.7.1 133159 2hszA 243 74.21 c.108.1.6 136726 2iekA 200 75.41 1g94A 448 76.56 b.71.1.1,c.1.8.1 65169,65170 1w6kA 732 78.57 a.102.4.2,a.102.4.2 114271,114272 1yleA 342 78.82 d.108.1.8 123647 1vl5A 260 79.68 c.66.1.41 108720 1l3sA 580 80.04 c.55.3.5,e.8.1.1 84521,84522 2dg7A 195 80.72 3cerA 343 81.98 2qzvA 873 82.58 2ibdA 204 88.40 2qo3A 915 89.74