# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 5.29e-63 1tqnA 486 1.11e-61 a.104.1.1 107238 2hi4A 495 1.21e-61 1r9oA 477 5.43e-60 a.104.1.1 104878 1zo4A 473 1.28e-59 1po5A 476 1.62e-59 a.104.1.1 94963 3c6gA 479 1.62e-59 2ij2A 470 4.11e-58 a.104.1.1 137449 2cibA 455 4.41e-58 2ve3A 444 4.56e-58 1jpzA 473 1.25e-57 a.104.1.1 67069 1bu7A 455 1.52e-57 a.104.1.1 18937 1h5zA 455 1.63e-57 a.104.1.1 90622 1u13A 455 4.66e-57 a.104.1.1 107578 2iagA 482 6.67e-57 1x8vA 455 1.90e-56 a.104.1.1 114968 3b6hA 498 4.84e-55 3b98A 475 5.85e-55 1qmqA 414 3.85e-51 a.104.1.1 18907 1yrcA 414 6.02e-51 a.104.1.1 123917 1dz4A 414 9.73e-51 a.104.1.1 18903 1izoA 417 1.51e-49 a.104.1.1 83851 1cpt 412 5.58e-49 1n97A 389 1.21e-48 a.104.1.1 80335 1jfbA 404 1.00e-46 a.104.1.1 66624 1f24A 402 1.54e-46 a.104.1.1 18953 1jipA 403 2.72e-46 a.104.1.1 66748 2d09A 407 3.07e-46 1z8oA 404 4.07e-46 a.104.1.1 124722 1q5dA 419 6.42e-46 a.104.1.1 95891 2d0eA 407 7.65e-46 1t2bA 397 1.12e-45 1lfkA 398 3.30e-45 a.104.1.1 77926 1eupA 403 8.32e-45 a.104.1.1 18967 1uedA 406 8.95e-45 a.104.1.1 99256 1gwiA 411 1.01e-44 a.104.1.1 76364 1odoA 408 1.09e-44 a.104.1.1 92783 1s1fA 406 1.44e-44 a.104.1.1 112008 1n40A 396 4.30e-44 a.104.1.1 79977 2fr7A 412 3.06e-41 1cptA 428 7.86e-41 a.104.1.1 18968 1io7A 368 3.96e-39 a.104.1.1 18971 3bujA 397 6.03e-38 3bdzA 397 2.36e-37 2zbxA 412 2.52e-36 2z3tA 425 6.56e-36 2uuqA 414 1.49e-35 2rfbA 343 6.63e-33 2kfnA 605 3.160 c.55.3.5,e.8.1.1 33682,42975 1u7kA 131 7.429 a.73.1.1 113087 2bs2A 660 7.725 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1zj8A 566 8.742 1f0jA 377 12.67 a.211.1.2 19346 1knwA 425 13.23 b.49.2.3,c.1.6.1 90969,90970 1mi3A 322 16.17 c.1.7.1 91274 2g7gA 213 18.64 a.4.1.9,a.121.1.1 134732,134733 1t0qA 498 19.56 a.25.1.2 106220 1u5tA 233 22.51 a.4.5.54,a.4.5.54 107684,107685 2dorA 311 26.58 c.1.4.1 28593 2c40A 312 28.97 2j4xA 213 29.42 2aeuA 374 32.95 c.67.1.8 126646 2b4pA 334 33.50 1s0pA 176 33.53 a.192.1.1 98300 3bu8A 235 33.70 2b4uA 335 33.94 2uubD 209 39.09 d.66.1.2 139935 1aw9A 216 39.60 a.45.1.1,c.47.1.5 17736,33030 2hzlA 365 44.51 1c7nA 399 44.51 c.67.1.3 34413 2bpqA 373 44.91 1f07A 321 44.92 c.1.16.3 59560 2p3eA 420 46.01 2aqjA 538 46.17 2j0wA 449 46.24 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 2qy6A 257 46.42 1vp4A 425 48.26 c.67.1.1 113935 1uouA 474 51.29 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1nf9A 207 54.68 c.33.1.3 85631 2e5iA 124 58.66 1a7jA 290 59.52 c.37.1.6 31952 2ousA 331 61.38 1ezwA 349 63.48 c.1.16.3 29558 2c0cA 362 66.52 1nf8A 207 66.80 c.33.1.3 85630 1fwxA 595 67.01 b.6.1.4,b.69.3.1 60069,60070 1xuuA 349 67.49 b.85.1.1,c.1.10.6 116067,116068 3c8tA 451 68.15 1dfcA 493 68.35 b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 1zk8A 183 69.64 a.4.1.9,a.121.1.1 125177,125178 1pjr 724 70.72 1nbaA 264 75.11 c.33.1.3 31753 1mnnA 340 75.27 b.2.5.7 79324 2r8qA 359 81.62 1dorA 311 81.82 c.1.4.1 28595 1wdyA 285 83.51 d.211.1.1 114541 2heuA 401 84.11 2fxtA 192 84.17 2genA 197 85.83 a.4.1.9,a.121.1.1 135062,135063 1y2kA 349 85.97 a.211.1.2 122571 2incA 491 86.21 a.25.1.2 137524 2j66A 428 86.84 1l3kA 196 87.14 d.58.7.1,d.58.7.1 73539,73540 1yoeA 322 87.43 2inpA 494 88.47