# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 7.39e-42 1tqnA 486 5.94e-41 a.104.1.1 107238 2hi4A 495 1.03e-40 1r9oA 477 1.23e-39 a.104.1.1 104878 1po5A 476 1.79e-39 a.104.1.1 94963 3c6gA 479 2.38e-39 1zo4A 473 6.91e-38 2ij2A 470 2.34e-37 a.104.1.1 137449 1bu7A 455 2.61e-37 a.104.1.1 18937 2cibA 455 4.52e-37 2iagA 482 7.24e-37 1jpzA 473 7.39e-37 a.104.1.1 67069 2ve3A 444 8.75e-37 1x8vA 455 1.13e-36 a.104.1.1 114968 1h5zA 455 1.21e-36 a.104.1.1 90622 1u13A 455 1.93e-36 a.104.1.1 107578 3b6hA 498 2.53e-36 3b98A 475 4.71e-35 1qmqA 414 1.65e-32 a.104.1.1 18907 1dz4A 414 7.88e-32 a.104.1.1 18903 1yrcA 414 1.32e-31 a.104.1.1 123917 1f24A 402 3.43e-30 a.104.1.1 18953 1z8oA 404 3.90e-30 a.104.1.1 124722 1izoA 417 5.41e-30 a.104.1.1 83851 1t2bA 397 5.47e-30 1jfbA 404 6.32e-30 a.104.1.1 66624 1jipA 403 1.09e-29 a.104.1.1 66748 1n97A 389 4.81e-29 a.104.1.1 80335 1odoA 408 6.05e-29 a.104.1.1 92783 1eupA 403 6.67e-29 a.104.1.1 18967 1s1fA 406 1.37e-28 a.104.1.1 112008 2d09A 407 2.61e-28 1uedA 406 3.12e-28 a.104.1.1 99256 1gwiA 411 5.58e-28 a.104.1.1 76364 1q5dA 419 1.27e-27 a.104.1.1 95891 1cpt 412 1.80e-27 2d0eA 407 1.88e-27 1n40A 396 5.88e-27 a.104.1.1 79977 3bdzA 397 2.47e-26 2fr7A 412 3.17e-26 1cptA 428 4.91e-26 a.104.1.1 18968 1lfkA 398 8.01e-26 a.104.1.1 77926 2zbxA 412 8.10e-26 1io7A 368 4.48e-24 a.104.1.1 18971 3bujA 397 2.61e-23 2z3tA 425 4.99e-23 2uuqA 414 3.03e-22 2rfbA 343 2.02e-21 1knwA 425 3.931 b.49.2.3,c.1.6.1 90969,90970 1fecA 490 4.108 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2o0tA 467 5.433 2j66A 428 5.742 2e4uA 555 8.465 1jubA 311 8.731 c.1.4.1 90908 1gvfA 286 9.244 c.1.10.2 70599 1a9xA 1058 9.296 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2qjtA 352 9.879 1xdiA 499 10.39 c.3.1.5,d.87.1.1 115160,115161 1j99A 293 11.36 c.37.1.5 71618 1ddzA 496 11.57 c.53.2.1,c.53.2.1 33372,33373 2fnaA 357 12.09 a.4.5.11,c.37.1.20 133809,133810 1zmdA 474 12.49 2dorA 311 12.81 c.1.4.1 28593 1tv8A 340 12.91 c.1.28.3 107352 3bq9A 460 13.12 2pmbA 462 13.14 1p0iA 529 14.51 c.69.1.1 93867 2ashA 381 15.22 1gesA 450 15.65 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1fj2A 232 17.72 c.69.1.14 34720 2q3mA 326 18.23 c.37.1.5 139795 1umdA 367 18.61 c.36.1.11 99599 2qptA 550 18.68 1t8tA 271 18.99 c.37.1.5 106685 1ynfA 458 20.63 d.126.1.7 123723 1sxjC 340 21.60 a.80.1.1,c.37.1.20 106085,106086 1oltA 457 22.00 c.1.28.2 93334 2gfiA 458 23.33 1dorA 311 23.90 c.1.4.1 28595 2pidA 356 23.96 1y8qA 346 26.33 2yquA 455 27.65 1kyhA 276 27.66 c.72.1.4 73222 1mo9A 523 27.67 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2ts1 419 27.87 1wm1A 317 28.59 c.69.1.7 109405 1zk7A 467 28.91 1j5sA 463 29.12 c.1.9.8 71580 2d0oA 610 29.13 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1yxaA 398 30.07 3tmkA 216 31.95 c.37.1.1 31920 1uc2A 481 32.04 d.261.1.1 99161 3grs 478 32.04 1zxxA 319 32.71 1ivyA 452 32.98 c.69.1.5 34654 2gh1A 301 33.06 c.66.1.49 135170 1g97A 459 33.36 b.81.1.4,c.68.1.5 60394,60395 1kfcA 268 34.72 c.1.2.4 77371 1jihA 531 35.85 d.240.1.1,e.8.1.7 90374,90375 2ozlA 365 36.78 1hyuA 521 37.82 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2olnA 397 38.23 1ea9C 583 41.18 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1rwhA 757 41.18 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1xa3A 437 41.94 c.123.1.1 115025 2dh2A 424 41.99 1xk7A 408 42.79 c.123.1.1 122071 2v6oA 596 42.96 1gytA 503 43.04 c.50.1.1,c.56.5.3 70765,70766 1txuA 273 45.16 a.222.1.1 107439 1zjaA 557 50.84 2cycA 375 50.91 3bixA 574 51.59 1vkjA 285 51.92 c.37.1.5 108666 1dd9A 338 52.60 e.13.1.1 43254 2cyaA 364 53.74 1k1xA 659 55.70 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1epuA 591 55.88 e.25.1.1 43358 2p0lA 288 56.19 1t08A 519 57.62 a.118.1.1 112190 1xg5A 279 58.23 c.2.1.2 115277 1qf9A 194 58.41 c.37.1.1 31848 1rqbA 539 59.22 a.5.7.2,c.1.10.5 105057,105058 2au3A 407 59.45 1cs0A 1073 60.26 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2v9dA 343 61.06 1hm9A 468 61.99 b.81.1.4,c.68.1.5 65866,65867 1j1iA 296 62.10 c.69.1.10 83977 1kssA 571 62.91 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1h3fA 432 63.97 c.26.1.1,d.66.1.4 76631,76632 1din 236 65.22 1n3lA 372 65.39 c.26.1.1 79966 2qgqA 304 66.17 1jeyB 565 66.49 b.131.1.2,c.62.1.4 90372,90373 2c7yA 404 66.72 1qo8A 566 67.15 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1ea5A 537 67.25 c.69.1.1 34592 1vqzA 341 68.03 d.224.1.3,d.104.1.3 120426,120427 1hr6B 443 68.97 d.185.1.1,d.185.1.1 61166,61167 1ywfA 296 69.22 c.45.1.5 124144 1nksA 194 69.85 c.37.1.1 31886 1ryiA 382 70.49 c.3.1.2,d.16.1.3 118813,118814 3b4uA 294 71.50 1ush 550 72.02 2a2aA 321 72.10 2r9zA 463 72.38 2gjlA 328 72.55 1vm7A 311 72.67 c.72.1.1 108884 2va8A 715 73.01 1g8yA 279 73.31 c.37.1.11 32302 2nvaA 372 73.47 2cjqA 720 73.73 3grsA 478 74.08 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1l3lA 234 74.70 a.4.6.2,d.110.5.1 73541,73542 2abqA 306 75.36 c.72.1.1 126528 1obbA 480 75.75 c.2.1.5,d.162.1.2 86760,86761 1ejxC 567 76.07 b.92.1.1,c.1.9.2 83184,83185 2v95A 371 76.14 2f1kA 279 76.30 a.100.1.12,c.2.1.6 132772,132773 1de4C 640 77.80 a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1aquA 297 77.97 c.37.1.5 31942 2c2qA 199 78.13 1mumA 295 78.56 c.1.12.7 85108 1gveA 327 78.68 c.1.7.1 70597 1sekA 378 79.17 e.1.1.1 42675 1fmjA 351 80.64 c.37.1.5 59879 7odcA 424 81.36 b.49.2.3,c.1.6.1 26488,28650 2a73B 991 81.40 2gf3A 389 81.71 c.3.1.2,d.16.1.3 135070,135071 1ni4A 365 82.23 c.36.1.11 85728 2v1xA 591 82.24 1topA 162 82.45 a.39.1.5 17223 2i5iA 263 82.63 2f2hA 773 83.58 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 2dc1A 236 84.58 2e5iA 124 84.75 1y56B 382 84.87 2qf7A 1165 86.23 2c40A 312 86.81 1wz9A 375 87.46 1n3yA 198 87.93 c.62.1.1 79976