# List of top-scoring protein chains for T0431.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 2.42e-34 a.104.1.1 107238 1w0fA 485 2.44e-34 a.104.1.1 108987 2nnjA 476 2.82e-32 2q6nA 478 3.94e-32 1suoA 476 3.98e-32 a.104.1.1 106026 1po5A 476 4.72e-32 a.104.1.1 94963 1r9oA 477 7.65e-32 a.104.1.1 104878 1og5A 475 8.90e-32 a.104.1.1 86982 1nr6A 473 1.19e-31 a.104.1.1 92085 3c6gA 479 1.02e-30 2hi4A 495 2.01e-30 2p85A 476 2.50e-30 2fdvA 476 3.72e-30 2pg6A 476 3.78e-30 2pg5A 476 4.78e-30 2pg7A 476 4.98e-30 2f9qA 479 7.96e-30 2ve3A 444 1.04e-28 2uwhA 458 1.90e-26 1zoaA 473 1.94e-26 1jpzA 473 2.24e-26 a.104.1.1 67069 2hpdA 471 2.35e-26 a.104.1.1 18939 2ij2A 470 2.35e-26 a.104.1.1 137449 1bvyA 458 2.38e-26 a.104.1.1 18943 1bu7A 455 2.41e-26 a.104.1.1 18937 2nnbA 471 2.58e-26 1zo4A 473 2.93e-26 1p0wA 455 3.62e-26 a.104.1.1 93878 1yqpA 455 3.81e-26 1p0xA 455 4.03e-26 a.104.1.1 93880 2ij3A 470 4.16e-26 1smiA 471 4.18e-26 a.104.1.1 105758 2ij4A 470 5.10e-26 1fahA 471 5.13e-26 a.104.1.1 18945 1yqoA 455 5.27e-26 a.104.1.1 123895 1jmeA 455 5.98e-26 a.104.1.1 66885 1p0vA 455 8.94e-26 a.104.1.1 93876 1h5zA 455 8.58e-24 a.104.1.1 90622 2cibA 455 9.59e-24 1u13A 455 1.23e-23 a.104.1.1 107578 1n97A 389 2.03e-18 a.104.1.1 80335 1wiyA 389 6.25e-18 a.104.1.1 114684 3b6hA 498 9.25e-18 2iagA 482 1.75e-17 1odoA 408 1.84e-17 a.104.1.1 92783 2vsjA 436 1.36e-16 2cd8A 436 1.45e-16 3b98A 475 1.47e-16 1gwiA 411 9.55e-16 a.104.1.1 76364 2z36A 413 1.01e-15 1cptA 428 1.30e-15 a.104.1.1 18968 1z8qA 404 2.41e-15 1ehgA 403 3.51e-15 a.104.1.1 18956 1cmnA 402 3.53e-15 a.104.1.1 18958 1ulwA 402 4.15e-15 a.104.1.1 113296 1z8pA 404 4.15e-15 a.104.1.1 124723 1jipA 403 4.18e-15 a.104.1.1 66748 1xqdA 403 4.25e-15 a.104.1.1 115841 1z8oA 404 4.97e-15 a.104.1.1 124722 1jioA 403 5.00e-15 a.104.1.1 66747 1ehfA 403 5.08e-15 a.104.1.1 18957 1cmjA 402 5.10e-15 a.104.1.1 18959 1jfbA 404 5.18e-15 a.104.1.1 66624 1gejA 403 5.19e-15 a.104.1.1 18954 1cl6A 402 5.21e-15 a.104.1.1 18960 1eupA 403 5.55e-15 a.104.1.1 18967 1f25A 402 8.19e-15 a.104.1.1 18952 2zbyA 412 1.08e-14 2zbxA 412 1.11e-14 1f24A 402 1.18e-14 a.104.1.1 18953 1q5dA 419 1.45e-14 a.104.1.1 95891 1pkfA 419 1.52e-14 a.104.1.1 94829 1f26A 402 1.74e-14 a.104.1.1 18951 2z3tA 425 2.27e-14 3bujA 397 6.31e-14 1uedA 406 2.39e-13 a.104.1.1 99256 2rfbA 343 3.00e-13 1lfkA 398 1.23e-12 a.104.1.1 77926 1izoA 417 2.55e-12 a.104.1.1 83851 2fr7A 412 3.32e-12 1io8A 368 5.03e-12 a.104.1.1 62618 1io7A 368 5.41e-12 a.104.1.1 18971 2d09A 407 7.26e-12 2d0eA 407 7.26e-12 1s1fA 406 7.27e-12 a.104.1.1 112008 1se6A 406 7.27e-12 1t93A 406 7.27e-12 1t2bA 397 9.94e-12 3bdzA 397 1.54e-11 1ue8A 367 1.67e-11 a.104.1.1 107781 2uuqA 414 2.56e-11 1t85A 414 4.13e-11 a.104.1.1 106650 2h7rA 414 4.18e-11 2gqxA 405 4.30e-11 2frzA 414 5.75e-11 a.104.1.1 134001 2a1mA 415 5.76e-11 a.104.1.1 126003 1qmqA 414 5.77e-11 a.104.1.1 18907 1c8jA 414 5.83e-11 a.104.1.1 59085 2fe6A 421 6.02e-11 a.104.1.1 133324 1p2yA 420 6.03e-11 a.104.1.1 93961 1rf9A 417 6.08e-11 a.104.1.1 111795 2zawA 415 6.11e-11 1yrcA 414 6.12e-11 a.104.1.1 123917 2ferA 411 6.35e-11 a.104.1.1 133350 1dz4A 414 6.66e-11 a.104.1.1 18903 1iwjA 415 6.71e-11 a.104.1.1 71489 2qbnA 421 7.13e-11 2qbmA 421 8.47e-11 2a1nA 415 8.96e-11 6cp4A 414 9.51e-11 a.104.1.1 18924 2nz5A 413 1.02e-10 2dkkA 411 1.03e-10 1iwkA 415 1.09e-10 a.104.1.1 71490 2a1oA 415 1.39e-10 2cp4A 414 1.48e-10 a.104.1.1 18933 1gebA 415 2.03e-10 a.104.1.1 18932 1n40A 396 2.38e-08 a.104.1.1 79977 2cb5A 453 10.41 d.3.1.1 37035 1cb5A 453 11.05 d.3.1.1 37037 1xlrA 164 11.11 d.190.1.1 115446 1tt8A 164 14.98 d.190.1.1 112635 1g81A 164 16.92 d.190.1.1 60336 1g1bA 164 17.21 d.190.1.1 60202 2atmA 331 30.14 2fhoB 87 31.00 2b9wA 424 36.96 2f9dA 125 40.96 d.58.7.1 133159 2f9jA 125 45.38 d.58.7.1 133164 2hydA 578 51.61 c.37.1.12,f.37.1.1 136875,136876 2cmjA 410 55.24 2uxuA 210 59.36 1mujB 197 70.05 b.1.1.2,d.19.1.1 79490,79491 1ohvA 472 75.42 c.67.1.4 93031 1o1zA 234 84.93 c.1.18.3 86555 1ib6A 312 86.23 c.2.1.5,d.162.1.1 62146,62147