# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 1.29e-58 2iagA 482 3.11e-58 3b6hA 498 5.94e-58 1tqnA 486 8.30e-58 a.104.1.1 107238 3c6gA 479 8.74e-58 1po5A 476 1.24e-57 a.104.1.1 94963 1zo4A 473 2.41e-57 2hi4A 495 2.93e-57 2ve3A 444 4.13e-57 1r9oA 477 9.66e-57 a.104.1.1 104878 2ij2A 470 9.66e-57 a.104.1.1 137449 1nr6A 473 1.66e-56 a.104.1.1 92085 1ea1A 455 2.30e-56 a.104.1.1 18970 1jpzA 473 2.30e-56 a.104.1.1 67069 1bu7A 455 2.88e-56 a.104.1.1 18937 1jmeA 455 4.56e-56 a.104.1.1 66885 3b98A 475 5.23e-56 1dt6A 473 6.66e-56 a.104.1.1 18977 1h5zA 455 1.18e-55 a.104.1.1 90622 1u13A 455 2.70e-55 a.104.1.1 107578 1x8vA 455 4.04e-55 a.104.1.1 114968 2cibA 455 1.90e-53 1izoA 417 6.28e-50 a.104.1.1 83851 1cptA 428 2.18e-49 a.104.1.1 18968 1cpt 412 1.09e-48 1qmqA 414 3.34e-48 a.104.1.1 18907 1dz4A 414 4.10e-48 a.104.1.1 18903 1phd 414 5.08e-48 2zbxA 412 1.21e-47 1jipA 403 4.63e-47 a.104.1.1 66748 1cmnA 402 4.66e-47 a.104.1.1 18958 2d0eA 407 4.99e-47 1jfbA 404 5.97e-47 a.104.1.1 66624 3bujA 397 7.96e-47 2d09A 407 8.34e-47 1rom 403 1.01e-46 1eupA 403 1.20e-46 a.104.1.1 18967 2z3tA 425 2.00e-46 1n97A 389 2.14e-46 a.104.1.1 80335 1f24A 402 2.27e-46 a.104.1.1 18953 1z8oA 404 3.15e-46 a.104.1.1 124722 1gwiA 411 7.84e-46 a.104.1.1 76364 1q5dA 419 1.85e-45 a.104.1.1 95891 1yrcA 414 1.63e-43 a.104.1.1 123917 1s1fA 406 2.52e-43 a.104.1.1 112008 1odoA 408 2.72e-43 a.104.1.1 92783 1lfkA 398 6.98e-43 a.104.1.1 77926 1n40A 396 9.82e-43 a.104.1.1 79977 3bdzA 397 1.02e-42 2uuqA 414 3.12e-42 2rfbA 343 4.87e-42 1t2bA 397 1.70e-41 1uedA 406 2.71e-41 a.104.1.1 99256 1io7A 368 5.32e-41 a.104.1.1 18971 1f4tA 368 5.74e-41 a.104.1.1 18973 2fr7A 412 7.66e-38 1a6i 217 2.277 3b81A 203 2.309 2scpA 174 3.054 a.39.1.5 17256 2of7A 260 4.072 2dg7A 195 7.047 3crjA 199 7.266 2zb9A 214 7.780 2c1lA 358 12.94 1vpwA 340 13.07 a.35.1.5,c.93.1.1 17087,35680 1pbgA 468 13.25 c.1.8.4 28946 2p67A 341 14.32 2is6A 680 15.56 2o7tA 199 17.81 1qguB 519 18.42 c.92.2.3 35626 2ggtA 164 20.34 c.47.1.10 135156 2qtzA 539 20.51 1e8xA 961 23.00 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 3craA 265 23.18 2pbxA 203 24.03 1e7uA 961 25.83 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1f20A 435 27.65 b.43.4.1,c.25.1.4 64932,64933 1bs2A 607 28.17 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 2hyxA 352 28.73 2hrzA 342 28.88 1pjrA 724 29.27 c.37.1.19,c.37.1.19 32391,32392 1qpzA 340 30.23 a.35.1.5,c.93.1.1 17097,35673 1hqvA 191 30.55 a.39.1.8 61160 2rasA 212 31.12 1zcbA 362 31.70 a.66.1.1,c.37.1.8 124901,124902 1jyeA 349 32.55 c.93.1.1 67455 1pfvA 551 32.97 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1z7bA 358 33.84 c.2.1.2 124599 2parA 201 34.51 1rktA 205 34.86 a.4.1.9,a.121.1.1 97623,97624 3ccyA 203 35.67 1ni4A 365 36.69 c.36.1.11 85728 2iekA 200 37.84 1t15A 214 38.48 c.15.1.3,c.15.1.3 99067,99068 1pscA 365 40.20 c.1.9.3 29058 2bo9A 308 42.32 c.56.5.1 128897 1w2xA 758 43.96 c.14.1.4,c.14.1.4 109134,109135 2raeA 207 44.18 2hytA 197 44.64 2fgeA 995 45.32 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1ev0A 58 46.71 d.71.1.1 39594 2yy7A 312 47.78 1i58A 189 48.75 d.122.1.3 61773 1gm7A 209 49.10 d.153.1.2 65302 2pzmA 330 51.68 1bf6A 291 52.92 c.1.9.3 29065 1oneA 436 53.53 c.1.11.1,d.54.1.1 29200,38844 2fq4A 192 54.75 a.4.1.9,a.121.1.1 133937,133938 1zkgA 212 56.47 a.4.1.9,a.121.1.1 125194,125195 1el4A 195 58.68 a.39.1.5 59453 1i0dA 332 58.77 c.1.9.3 61487 2vprA 207 59.64 2sasA 185 61.58 a.39.1.5 17258 1jt6A 188 62.79 a.4.1.9,a.121.1.1 67247,67248 1eywA 331 63.35 c.1.9.3 29057 2i10A 202 63.58 a.4.1.9,a.121.1.1 136960,136961 2qjvA 270 63.62 2e3bA 344 64.37 a.93.1.1 132024 1rpnA 335 65.16 c.2.1.2 97708 2p36A 335 66.34 1i5nA 146 66.68 a.24.10.3 61805 2yy8A 201 66.70 2rauA 354 67.17 2fymA 431 69.54 c.1.11.1,d.54.1.1 134379,134380 2p4hX 322 71.95 2glcA 342 72.10 3cdlA 203 72.11 1u9jA 358 72.73 c.2.1.2 113243 1ek8A 185 72.92 d.67.3.1 59444 1ja1A 622 73.36 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 3cjsB 72 73.39 1omrA 201 75.19 a.39.1.5 93349 1p9bA 442 76.45 c.37.1.10 94385 2b69A 343 76.65 c.2.1.2 127974 1b16A 254 77.73 c.2.1.2 29875 1kyzA 365 78.82 a.4.5.29,c.66.1.12 73312,73313 2iw0A 254 79.11 c.6.2.3 137737 1njgA 250 79.47 c.37.1.20 85785 1iseA 185 79.53 d.67.3.1 90691 1gsaA 316 79.67 c.30.1.3,d.142.1.1 31718,41477 1svsA 353 82.67 c.37.1.8 106051 2sas 185 85.04 1jf0A 195 85.20 a.39.1.5 62926 1t33A 224 85.39 a.4.1.9,a.121.1.1 106295,106296 1o4tA 133 86.12 b.82.1.9 86622 1zzoA 136 87.81 c.47.1.10 125913 1fp3A 402 88.76 a.102.1.3 18842 1s0aA 429 89.73 c.67.1.4 98263