# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 2.77e-57 2iagA 482 7.59e-57 3b6hA 498 1.19e-56 3c6gA 479 2.00e-56 1tqnA 486 2.64e-56 a.104.1.1 107238 1po5A 476 3.02e-56 a.104.1.1 94963 2hi4A 495 4.45e-56 1zo4A 473 6.24e-56 2ij2A 470 1.72e-55 a.104.1.1 137449 2ve3A 444 1.94e-55 1r9oA 477 2.08e-55 a.104.1.1 104878 1nr6A 473 2.63e-55 a.104.1.1 92085 1dt6A 473 3.08e-55 a.104.1.1 18977 1jpzA 473 4.46e-55 a.104.1.1 67069 1bu7A 455 5.05e-55 a.104.1.1 18937 1ea1A 455 5.59e-55 a.104.1.1 18970 1jmeA 455 9.41e-55 a.104.1.1 66885 1h5zA 455 2.68e-54 a.104.1.1 90622 3b98A 475 2.79e-54 1u13A 455 5.91e-54 a.104.1.1 107578 1x8vA 455 9.06e-54 a.104.1.1 114968 2cibA 455 1.75e-52 1izoA 417 3.51e-49 a.104.1.1 83851 1cptA 428 3.18e-48 a.104.1.1 18968 1cpt 412 8.74e-48 1qmqA 414 4.32e-47 a.104.1.1 18907 1dz4A 414 5.15e-47 a.104.1.1 18903 1phd 414 5.50e-47 2zbxA 412 1.12e-46 1cmnA 402 5.49e-46 a.104.1.1 18958 1jipA 403 5.83e-46 a.104.1.1 66748 1jfbA 404 7.43e-46 a.104.1.1 66624 2d0eA 407 1.09e-45 3bujA 397 1.16e-45 1eupA 403 1.66e-45 a.104.1.1 18967 1rom 403 1.74e-45 2d09A 407 1.75e-45 1f24A 402 1.93e-45 a.104.1.1 18953 2z3tA 425 2.27e-45 1n97A 389 2.28e-45 a.104.1.1 80335 1z8oA 404 4.50e-45 a.104.1.1 124722 1gwiA 411 1.41e-44 a.104.1.1 76364 1q5dA 419 4.36e-44 a.104.1.1 95891 1yrcA 414 1.05e-42 a.104.1.1 123917 1odoA 408 2.45e-42 a.104.1.1 92783 1s1fA 406 2.99e-42 a.104.1.1 112008 3bdzA 397 4.58e-42 1lfkA 398 9.39e-42 a.104.1.1 77926 1n40A 396 1.24e-41 a.104.1.1 79977 2uuqA 414 1.90e-41 2rfbA 343 3.24e-41 1uedA 406 1.42e-40 a.104.1.1 99256 1t2bA 397 1.95e-40 1io7A 368 2.43e-40 a.104.1.1 18971 1f4tA 368 2.74e-40 a.104.1.1 18973 2fr7A 412 6.51e-37 3b81A 203 2.419 1a6i 217 2.752 2scpA 174 3.149 a.39.1.5 17256 2of7A 260 3.565 2zb9A 214 5.755 2dg7A 195 6.946 3crjA 199 7.631 2pbxA 203 10.63 3craA 265 11.97 1pjrA 724 14.34 c.37.1.19,c.37.1.19 32391,32392 2parA 201 14.57 1vpwA 340 16.61 a.35.1.5,c.93.1.1 17087,35680 2iekA 200 18.89 1f20A 435 19.48 b.43.4.1,c.25.1.4 64932,64933 1hqvA 191 20.45 a.39.1.8 61160 2is6A 680 20.67 2c1lA 358 21.05 1zcbA 362 21.83 a.66.1.1,c.37.1.8 124901,124902 1gm7A 209 21.91 d.153.1.2 65302 1jf0A 195 24.79 a.39.1.5 62926 1jyeA 349 25.45 c.93.1.1 67455 2o7tA 199 25.88 2ggtA 164 26.91 c.47.1.10 135156 2i10A 202 30.12 a.4.1.9,a.121.1.1 136960,136961 1el4A 195 31.31 a.39.1.5 59453 1qguB 519 34.53 c.92.2.3 35626 1pbgA 468 34.79 c.1.8.4 28946 1pscA 365 34.95 c.1.9.3 29058 2hyxA 352 36.80 1ni4A 365 36.93 c.36.1.11 85728 2ikqA 270 37.87 1zcaA 359 39.40 a.66.1.1,c.37.1.8 124897,124898 1t33A 224 40.42 a.4.1.9,a.121.1.1 106295,106296 1ev0A 58 41.45 d.71.1.1 39594 1omrA 201 42.89 a.39.1.5 93349 2fq4A 192 44.38 a.4.1.9,a.121.1.1 133937,133938 2qtzA 539 44.63 1eywA 331 44.91 c.1.9.3 29057 2p36A 335 45.12 1i0dA 332 45.69 c.1.9.3 61487 2raeA 207 47.79 2bo9A 308 48.86 c.56.5.1 128897 1rpnA 335 50.53 c.2.1.2 97708 1i58A 189 50.66 d.122.1.3 61773 1jf2A 195 51.20 a.39.1.5 62930 2ccmA 191 51.35 2e3bA 344 53.26 a.93.1.1 132024 1kczA 413 53.26 c.1.11.2,d.54.1.1 68451,68452 1zkgA 212 53.91 a.4.1.9,a.121.1.1 125194,125195 2hrzA 342 53.99 1dpeA 507 56.52 c.94.1.1 35799 2glcA 342 56.66 2z1mA 345 56.75 2rauA 354 59.70 1rktA 205 59.88 a.4.1.9,a.121.1.1 97623,97624 1bf6A 291 61.80 c.1.9.3 29065 1svsA 353 61.99 c.37.1.8 106051 1qksA 567 62.55 a.3.1.2,b.70.2.1 15951,27710 2qjvA 270 63.19 2pzmA 330 63.71 2fncA 381 64.07 1uaaA 673 64.48 c.37.1.19,c.37.1.19 32401,32402 1qpzA 340 66.26 a.35.1.5,c.93.1.1 17097,35673 2rasA 212 67.04 1jt6A 188 68.08 a.4.1.9,a.121.1.1 67247,67248 1bs2A 607 69.28 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 1b3qA 379 70.80 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1gsaA 316 71.52 c.30.1.3,d.142.1.1 31718,41477 3cjsB 72 72.00 2ovkC 159 72.51 1iseA 185 73.02 d.67.3.1 90691 1whxA 111 73.46 d.58.7.1 114654 3ccyA 203 74.56 1xk4C 113 75.01 a.39.1.2 122057 1o4tA 133 75.45 b.82.1.9 86622 1e7uA 961 75.66 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2yy7A 312 76.97 1t56A 216 78.22 a.4.1.9,a.121.1.1 106428,106429 1oneA 436 78.43 c.1.11.1,d.54.1.1 29200,38844 2adcA 229 78.91 d.58.7.1,d.58.7.1 126582,126583 2adbA 148 79.98 d.58.7.1 126581 3bg1B 442 80.67 2id6A 202 80.77 2vprA 207 81.68 1uehA 253 82.75 c.101.1.1 99259 2hytA 197 86.34 1njgA 250 86.99 c.37.1.20 85785 1t15A 214 88.09 c.15.1.3,c.15.1.3 99067,99068 1sjyA 159 89.39 d.113.1.1 98900 1w6kA 732 89.89 a.102.4.2,a.102.4.2 114271,114272