# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 1.44e-63 2iagA 482 1.62e-63 3b6hA 498 2.52e-63 3c6gA 479 6.43e-63 1zo4A 473 1.15e-62 1po5A 476 1.57e-62 a.104.1.1 94963 2hi4A 495 2.28e-62 2ve3A 444 2.31e-62 2ij2A 470 3.53e-62 a.104.1.1 137449 1tqnA 486 4.79e-62 a.104.1.1 107238 1nr6A 473 5.32e-62 a.104.1.1 92085 1bu7A 455 9.28e-62 a.104.1.1 18937 1jmeA 455 1.00e-61 a.104.1.1 66885 1r9oA 477 2.02e-61 a.104.1.1 104878 1jpzA 473 2.39e-61 a.104.1.1 67069 1dt6A 473 2.63e-61 a.104.1.1 18977 3b98A 475 9.24e-61 1ea1A 455 1.05e-60 a.104.1.1 18970 1h5zA 455 1.13e-59 a.104.1.1 90622 1u13A 455 1.59e-59 a.104.1.1 107578 1x8vA 455 2.52e-59 a.104.1.1 114968 2cibA 455 9.89e-58 1izoA 417 4.30e-54 a.104.1.1 83851 1cptA 428 6.19e-54 a.104.1.1 18968 1cpt 412 5.28e-53 1qmqA 414 2.43e-52 a.104.1.1 18907 1dz4A 414 3.74e-52 a.104.1.1 18903 1phd 414 3.97e-52 2zbxA 412 1.69e-51 1cmnA 402 5.04e-51 a.104.1.1 18958 1jipA 403 6.11e-51 a.104.1.1 66748 1jfbA 404 8.01e-51 a.104.1.1 66624 1n97A 389 9.36e-51 a.104.1.1 80335 2z3tA 425 1.16e-50 1rom 403 1.18e-50 3bujA 397 1.48e-50 1eupA 403 1.77e-50 a.104.1.1 18967 2d0eA 407 2.23e-50 1f24A 402 2.84e-50 a.104.1.1 18953 1gwiA 411 4.16e-50 a.104.1.1 76364 2d09A 407 4.70e-50 1z8oA 404 6.12e-50 a.104.1.1 124722 1q5dA 419 4.99e-49 a.104.1.1 95891 1yrcA 414 1.01e-47 a.104.1.1 123917 1odoA 408 2.29e-47 a.104.1.1 92783 1s1fA 406 1.07e-46 a.104.1.1 112008 3bdzA 397 1.20e-46 1lfkA 398 1.57e-46 a.104.1.1 77926 2uuqA 414 5.03e-46 1n40A 396 6.42e-46 a.104.1.1 79977 2rfbA 343 9.12e-46 1t2bA 397 8.04e-45 1uedA 406 9.21e-45 a.104.1.1 99256 1io7A 368 1.54e-44 a.104.1.1 18971 1f4tA 368 1.68e-44 a.104.1.1 18973 2fr7A 412 4.52e-41 2of7A 260 1.201 1pjrA 724 4.515 c.37.1.19,c.37.1.19 32391,32392 2scpA 174 4.883 a.39.1.5 17256 1a6i 217 5.084 2is6A 680 5.538 3b81A 203 5.660 1pscA 365 8.352 c.1.9.3 29058 2parA 201 9.098 1jf0A 195 10.41 a.39.1.5 62926 2dg7A 195 11.08 1zcbA 362 13.65 a.66.1.1,c.37.1.8 124901,124902 2c1lA 358 13.99 1i0dA 332 14.48 c.1.9.3 61487 1dpeA 507 15.85 c.94.1.1 35799 1eywA 331 16.36 c.1.9.3 29057 1bs2A 607 16.55 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 1a0cA 438 16.56 c.1.15.3 29529 1oneA 436 17.28 c.1.11.1,d.54.1.1 29200,38844 1omrA 201 17.45 a.39.1.5 93349 2pbxA 203 17.66 1i58A 189 18.52 d.122.1.3 61773 1f20A 435 19.33 b.43.4.1,c.25.1.4 64932,64933 2i10A 202 20.00 a.4.1.9,a.121.1.1 136960,136961 2zb9A 214 20.16 1bf6A 291 23.25 c.1.9.3 29065 1hqvA 191 25.61 a.39.1.8 61160 2fymA 431 25.76 c.1.11.1,d.54.1.1 134379,134380 1gsaA 316 26.55 c.30.1.3,d.142.1.1 31718,41477 1w7jB 151 27.05 a.39.1.5 120690 3crjA 199 29.45 2bo9A 308 30.40 c.56.5.1 128897 2raeA 207 30.61 1ekeA 230 31.49 c.55.3.1 33572 2e3bA 344 31.90 a.93.1.1 132024 1zcaA 359 32.57 a.66.1.1,c.37.1.8 124897,124898 3craA 265 35.61 1i5nA 146 35.67 a.24.10.3 61805 2ccmA 191 35.89 1jf2A 195 37.76 a.39.1.5 62930 1ha1 184 37.77 3bq3A 270 39.43 1uaaA 673 40.17 c.37.1.19,c.37.1.19 32401,32402 4enl 436 41.41 1vpwA 340 42.03 a.35.1.5,c.93.1.1 17087,35680 1svsA 353 43.00 c.37.1.8 106051 1ta9A 450 44.72 1pbgA 468 45.19 c.1.8.4 28946 2f2hA 773 48.08 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1qo7A 394 48.27 c.69.1.11 34697 2qtzA 539 48.58 2javA 279 49.10 d.144.1.7 138243 2ovkC 159 49.23 2iekA 200 50.41 1w9yA 319 51.20 b.82.2.1 120801 1qguB 519 51.99 c.92.2.3 35626 1floA 422 52.66 a.60.9.1,d.163.1.1 18106,42166 1ni4A 365 53.58 c.36.1.11 85728 1hl9A 449 53.95 b.71.1.3,c.1.8.11 90650,90651 3cjsB 72 54.22 1el4A 195 54.39 a.39.1.5 59453 2hpsA 186 54.46 1ev0A 58 54.58 d.71.1.1 39594 2z1mA 345 56.29 1jbaA 204 56.73 a.39.1.5 17330 1hjdA 101 56.76 b.34.2.1 65846 1dd5A 185 56.76 d.67.3.1 39564 2al1A 436 58.81 c.1.11.1,d.54.1.1 126949,126950 2ggtA 164 59.26 c.47.1.10 135156 2ew2A 316 59.68 2ptzA 432 59.92 1x8bA 289 60.61 1iseA 185 61.32 d.67.3.1 90691 2gc7D 147 62.41 a.3.1.1 134957 1urnA 97 64.76 d.58.7.1 39153 1l3kA 196 65.12 d.58.7.1,d.58.7.1 73539,73540 1ek8A 185 66.01 d.67.3.1 59444 2fncA 381 68.56 2sasA 185 69.13 a.39.1.5 17258 2g29A 417 69.52 1u6bA 98 70.06 d.58.7.1 107703 3bneA 839 72.58 2rasA 212 72.84 2pa6A 427 73.00 1p9bA 442 73.21 c.37.1.10 94385 1z5rA 306 73.46 c.56.5.1 124488 2gv5A 161 74.83 1a2xA 159 74.83 a.39.1.5 17251 1ni5A 433 75.27 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1whxA 111 75.64 d.58.7.1 114654 1qrjB 199 75.68 a.28.3.1 16952 1a0eA 443 75.75 c.1.15.3 29537 2hyxA 352 75.78 2ozlA 365 75.88 1o4tA 133 75.95 b.82.1.9 86622 1zkgA 212 76.05 a.4.1.9,a.121.1.1 125194,125195 2jesA 503 76.21 2al2A 436 76.24 c.1.11.1,d.54.1.1 126953,126954 1pfvA 551 78.81 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1e8xA 961 79.11 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 2di4A 238 80.36 a.269.1.1 131522 3cjdA 198 81.97 1f07A 321 83.17 c.1.16.3 59560 1alvA 173 83.20 a.39.1.8 17370 1b3qA 379 84.06 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 4mbp 370 84.18 1d2rB 326 84.37 c.26.1.1 31573