# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 3.70e-52 2iagA 482 6.07e-52 3b6hA 498 1.08e-51 1tqnA 486 1.57e-51 a.104.1.1 107238 3c6gA 479 2.59e-51 1po5A 476 2.66e-51 a.104.1.1 94963 1zo4A 473 3.11e-51 2ve3A 444 5.00e-51 2hi4A 495 5.03e-51 2ij2A 470 7.07e-51 a.104.1.1 137449 1r9oA 477 1.31e-50 a.104.1.1 104878 1jmeA 455 1.65e-50 a.104.1.1 66885 1bu7A 455 1.68e-50 a.104.1.1 18937 1jpzA 473 2.53e-50 a.104.1.1 67069 1ea1A 455 2.88e-50 a.104.1.1 18970 1nr6A 473 3.00e-50 a.104.1.1 92085 3b98A 475 5.61e-50 1dt6A 473 7.57e-50 a.104.1.1 18977 1h5zA 455 1.32e-49 a.104.1.1 90622 1u13A 455 2.59e-49 a.104.1.1 107578 1x8vA 455 5.04e-49 a.104.1.1 114968 2cibA 455 6.48e-48 1izoA 417 1.74e-44 a.104.1.1 83851 1cptA 428 6.88e-44 a.104.1.1 18968 1cpt 412 2.57e-43 1qmqA 414 3.61e-43 a.104.1.1 18907 1dz4A 414 7.93e-43 a.104.1.1 18903 1phd 414 9.95e-43 2zbxA 412 1.83e-42 2d0eA 407 7.43e-42 1cmnA 402 7.73e-42 a.104.1.1 18958 1jipA 403 9.02e-42 a.104.1.1 66748 2d09A 407 1.13e-41 2z3tA 425 1.49e-41 3bujA 397 1.54e-41 1jfbA 404 1.58e-41 a.104.1.1 66624 1eupA 403 1.90e-41 a.104.1.1 18967 1rom 403 2.40e-41 1n97A 389 3.35e-41 a.104.1.1 80335 1f24A 402 4.82e-41 a.104.1.1 18953 1z8oA 404 7.56e-41 a.104.1.1 124722 1gwiA 411 1.25e-40 a.104.1.1 76364 1q5dA 419 3.48e-40 a.104.1.1 95891 1yrcA 414 6.20e-39 a.104.1.1 123917 1odoA 408 1.25e-38 a.104.1.1 92783 3bdzA 397 1.95e-38 1s1fA 406 3.82e-38 a.104.1.1 112008 1lfkA 398 4.86e-38 a.104.1.1 77926 1n40A 396 6.15e-38 a.104.1.1 79977 2rfbA 343 6.35e-38 2uuqA 414 8.41e-38 1uedA 406 1.63e-37 a.104.1.1 99256 1t2bA 397 6.44e-37 1f4tA 368 1.12e-36 a.104.1.1 18973 1io7A 368 1.50e-36 a.104.1.1 18971 2fr7A 412 2.77e-33 3b81A 203 1.990 1a6i 217 2.952 3crjA 199 3.010 2zb9A 214 3.853 1vpwA 340 6.544 a.35.1.5,c.93.1.1 17087,35680 2scpA 174 6.558 a.39.1.5 17256 2of7A 260 6.819 1rktA 205 7.171 a.4.1.9,a.121.1.1 97623,97624 2dg7A 195 7.478 2pbxA 203 9.522 2fq4A 192 9.534 a.4.1.9,a.121.1.1 133937,133938 1bs2A 607 9.745 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 2is6A 680 10.01 1qguB 519 11.25 c.92.2.3 35626 2i10A 202 12.67 a.4.1.9,a.121.1.1 136960,136961 2c1lA 358 13.91 2hytA 197 14.79 1t56A 216 15.20 a.4.1.9,a.121.1.1 106428,106429 3ccyA 203 16.08 2bs3A 656 16.22 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2rasA 212 16.91 1f20A 435 17.82 b.43.4.1,c.25.1.4 64932,64933 1jyeA 349 20.30 c.93.1.1 67455 3craA 265 21.07 3cdlA 203 22.40 2z1mA 345 23.00 1qpzA 340 23.03 a.35.1.5,c.93.1.1 17097,35673 2raeA 207 23.20 1pbgA 468 25.44 c.1.8.4 28946 2rebA 352 25.45 c.37.1.11,d.48.1.1 32282,38767 1t33A 224 26.47 a.4.1.9,a.121.1.1 106295,106296 2o7tA 199 27.69 1e8xA 961 27.94 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1ni4A 365 28.43 c.36.1.11 85728 2hyxA 352 29.78 2np5A 203 29.85 a.4.1.9,a.121.1.1 138424,138425 2bo9A 308 29.87 c.56.5.1 128897 1jt6A 188 30.21 a.4.1.9,a.121.1.1 67247,67248 2parA 201 32.93 2ggtA 164 34.60 c.47.1.10 135156 1rpnA 335 36.24 c.2.1.2 97708 1z5rA 306 37.86 c.56.5.1 124488 1w6kA 732 39.68 a.102.4.2,a.102.4.2 114271,114272 1e7uA 961 40.12 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2id3A 225 41.35 a.4.1.9,a.121.1.1 137261,137262 1kyzA 365 43.02 a.4.5.29,c.66.1.12 73312,73313 2q4uA 272 45.78 2yy8A 201 46.44 1b16A 254 47.68 c.2.1.2 29875 1z7bA 358 47.86 c.2.1.2 124599 1el4A 195 49.90 a.39.1.5 59453 2pzmA 330 50.08 1s0aA 429 51.42 c.67.1.4 98263 1oneA 436 51.44 c.1.11.1,d.54.1.1 29200,38844 2qtzA 539 51.57 1gsaA 316 52.19 c.30.1.3,d.142.1.1 31718,41477 1hqvA 191 52.63 a.39.1.8 61160 2hrzA 342 53.72 1ev0A 58 53.87 d.71.1.1 39594 1dhs 344 55.02 1h8eA 510 56.68 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 3bcgA 215 56.80 1w9yA 319 61.03 b.82.2.1 120801 2iekA 200 61.67 2genA 197 62.61 a.4.1.9,a.121.1.1 135062,135063 1pfvA 551 62.77 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1fp3A 402 64.02 a.102.1.3 18842 1alvA 173 68.73 a.39.1.8 17370 1dbqA 289 70.30 c.93.1.1 35666 1u9jA 358 70.80 c.2.1.2 113243 1kb9A 431 70.94 d.185.1.1,d.185.1.1 77311,77312 2di4A 238 71.37 a.269.1.1 131522 2qibA 231 72.35 2iw0A 254 73.31 c.6.2.3 137737 2bs2A 660 74.12 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 2e3bA 344 74.60 a.93.1.1 132024 1zkgA 212 76.20 a.4.1.9,a.121.1.1 125194,125195 3cjsB 72 76.95 1bavA 309 78.49 c.56.5.1 33806 1xk4C 113 81.10 a.39.1.2 122057 1vi0A 206 81.23 a.4.1.9,a.121.1.1 100720,100721 2hyjA 200 84.11 1i58A 189 85.54 d.122.1.3 61773 1omrA 201 86.29 a.39.1.5 93349 2p4hX 322 86.87 2ew2A 316 87.32 1spvA 184 87.46 c.50.1.2 98957 2yy7A 312 89.45