# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 6.13e-52 2iagA 482 6.20e-52 3b6hA 498 9.44e-52 1tqnA 486 2.54e-51 a.104.1.1 107238 1po5A 476 3.69e-51 a.104.1.1 94963 3c6gA 479 4.32e-51 1zo4A 473 7.42e-51 2hi4A 495 8.76e-51 2ve3A 444 1.01e-50 2ij2A 470 1.65e-50 a.104.1.1 137449 1r9oA 477 1.95e-50 a.104.1.1 104878 1jmeA 455 3.65e-50 a.104.1.1 66885 1bu7A 455 3.97e-50 a.104.1.1 18937 1ea1A 455 5.12e-50 a.104.1.1 18970 1nr6A 473 5.32e-50 a.104.1.1 92085 1jpzA 473 5.52e-50 a.104.1.1 67069 3b98A 475 6.25e-50 1dt6A 473 1.52e-49 a.104.1.1 18977 1h5zA 455 2.94e-49 a.104.1.1 90622 1u13A 455 4.70e-49 a.104.1.1 107578 1x8vA 455 8.41e-49 a.104.1.1 114968 2cibA 455 1.37e-47 1izoA 417 2.69e-44 a.104.1.1 83851 1cptA 428 6.73e-44 a.104.1.1 18968 1cpt 412 2.86e-43 1qmqA 414 3.62e-43 a.104.1.1 18907 1phd 414 8.61e-43 1dz4A 414 8.79e-43 a.104.1.1 18903 2zbxA 412 1.40e-42 2d0eA 407 4.99e-42 1cmnA 402 7.76e-42 a.104.1.1 18958 2d09A 407 8.01e-42 3bujA 397 9.99e-42 1jipA 403 1.14e-41 a.104.1.1 66748 2z3tA 425 1.27e-41 1jfbA 404 1.66e-41 a.104.1.1 66624 1eupA 403 1.96e-41 a.104.1.1 18967 1rom 403 2.18e-41 1n97A 389 3.51e-41 a.104.1.1 80335 1f24A 402 5.80e-41 a.104.1.1 18953 1z8oA 404 8.20e-41 a.104.1.1 124722 1gwiA 411 1.78e-40 a.104.1.1 76364 1q5dA 419 3.93e-40 a.104.1.1 95891 1yrcA 414 8.31e-39 a.104.1.1 123917 3bdzA 397 1.97e-38 1odoA 408 2.24e-38 a.104.1.1 92783 1s1fA 406 2.88e-38 a.104.1.1 112008 1lfkA 398 3.53e-38 a.104.1.1 77926 2rfbA 343 5.58e-38 2uuqA 414 5.74e-38 1n40A 396 6.32e-38 a.104.1.1 79977 1uedA 406 1.49e-37 a.104.1.1 99256 1t2bA 397 6.01e-37 1f4tA 368 1.23e-36 a.104.1.1 18973 1io7A 368 1.43e-36 a.104.1.1 18971 2fr7A 412 2.37e-33 3b81A 203 1.971 3crjA 199 3.809 1a6i 217 3.869 2zb9A 214 4.346 2of7A 260 4.498 1rktA 205 6.600 a.4.1.9,a.121.1.1 97623,97624 2pbxA 203 6.849 1vpwA 340 7.350 a.35.1.5,c.93.1.1 17087,35680 2dg7A 195 8.077 2scpA 174 8.855 a.39.1.5 17256 1qguB 519 9.090 c.92.2.3 35626 2hytA 197 9.854 2is6A 680 11.19 2c1lA 358 11.54 2i10A 202 12.41 a.4.1.9,a.121.1.1 136960,136961 2fq4A 192 13.04 a.4.1.9,a.121.1.1 133937,133938 1bs2A 607 13.11 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 1f20A 435 15.30 b.43.4.1,c.25.1.4 64932,64933 1e8xA 961 16.12 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1jyeA 349 16.16 c.93.1.1 67455 3ccyA 203 16.74 2raeA 207 18.67 1t33A 224 19.59 a.4.1.9,a.121.1.1 106295,106296 2bo9A 308 20.57 c.56.5.1 128897 2rasA 212 20.80 1ni4A 365 21.75 c.36.1.11 85728 1qpzA 340 21.85 a.35.1.5,c.93.1.1 17097,35673 1t56A 216 22.94 a.4.1.9,a.121.1.1 106428,106429 2rebA 352 23.11 c.37.1.11,d.48.1.1 32282,38767 2bs3A 656 25.84 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2parA 201 26.35 1z5rA 306 27.11 c.56.5.1 124488 2np5A 203 27.44 a.4.1.9,a.121.1.1 138424,138425 1e7uA 961 27.83 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1jt6A 188 28.68 a.4.1.9,a.121.1.1 67247,67248 1pbgA 468 30.66 c.1.8.4 28946 3craA 265 31.84 2o7tA 199 33.50 2id3A 225 38.92 a.4.1.9,a.121.1.1 137261,137262 2pzmA 330 39.30 3cdlA 203 40.59 2z1mA 345 42.42 1w6kA 732 42.72 a.102.4.2,a.102.4.2 114271,114272 1s0aA 429 44.31 c.67.1.4 98263 2ggtA 164 45.21 c.47.1.10 135156 1rpnA 335 45.66 c.2.1.2 97708 2hyxA 352 46.77 2iekA 200 47.17 1hqvA 191 48.12 a.39.1.8 61160 1ev0A 58 49.25 d.71.1.1 39594 2q4uA 272 49.95 2qtzA 539 50.38 1bavA 309 50.38 c.56.5.1 33806 1oneA 436 50.70 c.1.11.1,d.54.1.1 29200,38844 1fp3A 402 51.60 a.102.1.3 18842 3bcgA 215 52.48 1kyzA 365 54.35 a.4.5.29,c.66.1.12 73312,73313 2hrzA 342 56.56 1gsaA 316 56.86 c.30.1.3,d.142.1.1 31718,41477 2iw0A 254 56.94 c.6.2.3 137737 1m4lA 307 59.84 c.56.5.1 78604 1dd9A 338 61.53 e.13.1.1 43254 1b16A 254 62.34 c.2.1.2 29875 1qrjB 199 62.88 a.28.3.1 16952 1zkgA 212 64.04 a.4.1.9,a.121.1.1 125194,125195 1h8eA 510 65.26 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1dbqA 289 66.21 c.93.1.1 35666 1el4A 195 66.37 a.39.1.5 59453 1alvA 173 66.47 a.39.1.8 17370 1omrA 201 66.97 a.39.1.5 93349 3cjsB 72 68.54 1bf6A 291 69.06 c.1.9.3 29065 2e3bA 344 69.31 a.93.1.1 132024 1z7bA 358 70.42 c.2.1.2 124599 2ctc 307 71.00 1xk4C 113 75.83 a.39.1.2 122057 1dhs 344 76.71 2di4A 238 77.08 a.269.1.1 131522 3bruA 222 80.22 2fncA 381 81.65 2rauA 354 83.00 1umpA 631 83.72 a.102.4.2,a.102.4.2 99619,99620 1dtdA 303 85.20 c.56.5.1 33823 2o7oA 207 86.13 a.4.1.9,a.121.1.1 138930,138931 1dpeA 507 86.83 c.94.1.1 35799 2ew2A 316 87.08 2yy8A 201 87.42 1p9bA 442 87.74 c.37.1.10 94385