# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 4.08e-51 2iagA 482 4.73e-51 3b6hA 498 8.85e-51 1tqnA 486 1.34e-50 a.104.1.1 107238 3c6gA 479 2.16e-50 1zo4A 473 2.26e-50 1po5A 476 2.82e-50 a.104.1.1 94963 2ve3A 444 4.83e-50 2ij2A 470 4.99e-50 a.104.1.1 137449 2hi4A 495 5.18e-50 1bu7A 455 1.11e-49 a.104.1.1 18937 1jmeA 455 1.21e-49 a.104.1.1 66885 1r9oA 477 1.30e-49 a.104.1.1 104878 1jpzA 473 1.49e-49 a.104.1.1 67069 1ea1A 455 2.15e-49 a.104.1.1 18970 1nr6A 473 2.97e-49 a.104.1.1 92085 3b98A 475 2.99e-49 1dt6A 473 5.03e-49 a.104.1.1 18977 1h5zA 455 1.01e-48 a.104.1.1 90622 1u13A 455 1.70e-48 a.104.1.1 107578 1x8vA 455 3.30e-48 a.104.1.1 114968 2cibA 455 5.32e-47 1izoA 417 8.82e-44 a.104.1.1 83851 1cptA 428 2.39e-43 a.104.1.1 18968 1cpt 412 8.74e-43 1qmqA 414 1.29e-42 a.104.1.1 18907 1dz4A 414 3.00e-42 a.104.1.1 18903 1phd 414 3.66e-42 2zbxA 412 6.12e-42 2d0eA 407 1.65e-41 2d09A 407 3.14e-41 3bujA 397 3.95e-41 2z3tA 425 3.97e-41 1cmnA 402 4.19e-41 a.104.1.1 18958 1jipA 403 4.34e-41 a.104.1.1 66748 1jfbA 404 8.99e-41 a.104.1.1 66624 1eupA 403 9.12e-41 a.104.1.1 18967 1n97A 389 1.16e-40 a.104.1.1 80335 1rom 403 1.20e-40 1f24A 402 2.55e-40 a.104.1.1 18953 1z8oA 404 3.12e-40 a.104.1.1 124722 1gwiA 411 5.08e-40 a.104.1.1 76364 1q5dA 419 1.07e-39 a.104.1.1 95891 1yrcA 414 2.37e-38 a.104.1.1 123917 1odoA 408 4.99e-38 a.104.1.1 92783 3bdzA 397 7.22e-38 1s1fA 406 9.74e-38 a.104.1.1 112008 1lfkA 398 9.94e-38 a.104.1.1 77926 2rfbA 343 1.69e-37 2uuqA 414 1.82e-37 1n40A 396 2.18e-37 a.104.1.1 79977 1uedA 406 3.14e-37 a.104.1.1 99256 1t2bA 397 2.01e-36 1f4tA 368 3.52e-36 a.104.1.1 18973 1io7A 368 4.70e-36 a.104.1.1 18971 2fr7A 412 6.05e-33 3b81A 203 1.884 1a6i 217 2.307 3crjA 199 3.572 1vpwA 340 4.017 a.35.1.5,c.93.1.1 17087,35680 2zb9A 214 4.418 2of7A 260 5.779 1rktA 205 6.361 a.4.1.9,a.121.1.1 97623,97624 2scpA 174 6.618 a.39.1.5 17256 2dg7A 195 8.863 2pbxA 203 8.880 2is6A 680 9.561 1qguB 519 9.903 c.92.2.3 35626 2hytA 197 10.17 2i10A 202 11.75 a.4.1.9,a.121.1.1 136960,136961 3ccyA 203 12.34 1jyeA 349 12.43 c.93.1.1 67455 1qpzA 340 13.86 a.35.1.5,c.93.1.1 17097,35673 2c1lA 358 13.99 1f20A 435 14.25 b.43.4.1,c.25.1.4 64932,64933 2bs3A 656 15.55 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1bs2A 607 16.17 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 2fq4A 192 16.93 a.4.1.9,a.121.1.1 133937,133938 2rasA 212 18.31 1pbgA 468 19.09 c.1.8.4 28946 3craA 265 21.09 2rebA 352 21.45 c.37.1.11,d.48.1.1 32282,38767 1jt6A 188 22.65 a.4.1.9,a.121.1.1 67247,67248 1t33A 224 23.54 a.4.1.9,a.121.1.1 106295,106296 1t56A 216 25.50 a.4.1.9,a.121.1.1 106428,106429 2bo9A 308 25.54 c.56.5.1 128897 2raeA 207 26.42 2np5A 203 27.71 a.4.1.9,a.121.1.1 138424,138425 2o7tA 199 30.15 1b16A 254 30.38 c.2.1.2 29875 2parA 201 30.84 1z7bA 358 32.12 c.2.1.2 124599 1ni4A 365 32.32 c.36.1.11 85728 3cdlA 203 32.42 1z5rA 306 33.99 c.56.5.1 124488 2iekA 200 34.22 2pzmA 330 34.52 2z1mA 345 35.10 2hyxA 352 35.32 1rpnA 335 38.57 c.2.1.2 97708 2qtzA 539 39.20 2ggtA 164 41.43 c.47.1.10 135156 1kyzA 365 43.18 a.4.5.29,c.66.1.12 73312,73313 1e8xA 961 43.85 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1zkgA 212 48.49 a.4.1.9,a.121.1.1 125194,125195 2hrzA 342 49.44 2id3A 225 49.99 a.4.1.9,a.121.1.1 137261,137262 1el4A 195 50.74 a.39.1.5 59453 1ev0A 58 52.29 d.71.1.1 39594 1qrjB 199 53.09 a.28.3.1 16952 1bavA 309 54.23 c.56.5.1 33806 1w6kA 732 54.44 a.102.4.2,a.102.4.2 114271,114272 1fp3A 402 54.46 a.102.1.3 18842 1gsaA 316 55.87 c.30.1.3,d.142.1.1 31718,41477 1hqvA 191 56.01 a.39.1.8 61160 1oneA 436 57.57 c.1.11.1,d.54.1.1 29200,38844 2e3bA 344 58.53 a.93.1.1 132024 1qqtA 551 59.40 a.27.1.1,c.26.1.1,g.41.1.1 16923,31590,45175 1dbqA 289 60.11 c.93.1.1 35666 1pfvA 551 61.24 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2yy8A 201 61.78 1dhs 344 62.01 1u9jA 358 63.58 c.2.1.2 113243 1m4lA 307 65.16 c.56.5.1 78604 2p67A 341 66.55 2q4uA 272 67.03 1jf2A 195 68.57 a.39.1.5 62930 2bs2A 660 70.35 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1w9yA 319 70.43 b.82.2.1 120801 1i58A 189 72.71 d.122.1.3 61773 1h8eA 510 73.64 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 3bruA 222 73.79 3cjsB 72 74.01 3bcgA 215 77.10 1t15A 214 77.78 c.15.1.3,c.15.1.3 99067,99068 2di4A 238 77.95 a.269.1.1 131522 1omrA 201 78.75 a.39.1.5 93349 2ccmA 191 81.52 1pjrA 724 82.07 c.37.1.19,c.37.1.19 32391,32392 2yy7A 312 83.78 1t2aA 375 84.44 c.2.1.2 99078 1s0aA 429 85.24 c.67.1.4 98263 2hyjA 200 86.91 1p9bA 442 87.50 c.37.1.10 94385 2ctc 307 87.66 1qmuA 380 88.00 b.3.2.1,c.56.5.1 22534,33827 2iw0A 254 88.86 c.6.2.3 137737