# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 1.20e-60 1zo4A 473 6.70e-60 2ve3A 444 1.10e-59 1nr6A 473 1.22e-59 a.104.1.1 92085 1tqnA 486 1.37e-59 a.104.1.1 107238 1po5A 476 2.42e-59 a.104.1.1 94963 3b6hA 498 2.68e-59 1bu7A 455 2.75e-59 a.104.1.1 18937 2iagA 482 3.17e-59 2hi4A 495 3.33e-59 1r9oA 477 3.88e-59 a.104.1.1 104878 3c6gA 479 3.98e-59 1dt6A 473 5.33e-59 a.104.1.1 18977 2ij2A 470 8.89e-59 a.104.1.1 137449 1jmeA 455 1.63e-58 a.104.1.1 66885 1ea1A 455 1.69e-58 a.104.1.1 18970 1jpzA 473 5.71e-58 a.104.1.1 67069 3b98A 475 1.04e-57 1h5zA 455 2.97e-57 a.104.1.1 90622 1u13A 455 4.77e-57 a.104.1.1 107578 1x8vA 455 6.67e-57 a.104.1.1 114968 2cibA 455 7.58e-55 1cptA 428 2.10e-51 a.104.1.1 18968 1izoA 417 1.09e-50 a.104.1.1 83851 1cpt 412 1.65e-50 1qmqA 414 2.66e-50 a.104.1.1 18907 2zbxA 412 4.70e-50 1dz4A 414 5.71e-50 a.104.1.1 18903 1phd 414 8.54e-50 3bujA 397 2.57e-49 1cmnA 402 3.86e-49 a.104.1.1 18958 1rom 403 9.65e-49 1jfbA 404 1.51e-48 a.104.1.1 66624 1jipA 403 2.00e-48 a.104.1.1 66748 1f24A 402 4.01e-48 a.104.1.1 18953 1n97A 389 4.74e-48 a.104.1.1 80335 2d0eA 407 5.10e-48 2d09A 407 6.80e-48 1z8oA 404 1.29e-47 a.104.1.1 124722 2z3tA 425 1.35e-47 1eupA 403 2.31e-47 a.104.1.1 18967 1gwiA 411 5.06e-47 a.104.1.1 76364 1q5dA 419 9.50e-47 a.104.1.1 95891 1yrcA 414 9.51e-46 a.104.1.1 123917 1odoA 408 2.40e-45 a.104.1.1 92783 3bdzA 397 3.74e-45 1lfkA 398 4.81e-45 a.104.1.1 77926 1s1fA 406 6.34e-45 a.104.1.1 112008 2rfbA 343 4.53e-44 1t2bA 397 4.96e-44 1n40A 396 5.05e-44 a.104.1.1 79977 2uuqA 414 7.63e-44 1uedA 406 4.40e-43 a.104.1.1 99256 1io7A 368 2.46e-42 a.104.1.1 18971 1f4tA 368 4.65e-42 a.104.1.1 18973 2fr7A 412 1.71e-38 1pjrA 724 3.489 c.37.1.19,c.37.1.19 32391,32392 2pbxA 203 5.489 1spvA 184 5.878 c.50.1.2 98957 2bo9A 308 6.251 c.56.5.1 128897 2scpA 174 12.55 a.39.1.5 17256 1z5rA 306 16.19 c.56.5.1 124488 3b81A 203 16.95 1txuA 273 21.20 a.222.1.1 107439 2of7A 260 21.31 2hyxA 352 21.34 2ggtA 164 21.61 c.47.1.10 135156 1gsaA 316 24.52 c.30.1.3,d.142.1.1 31718,41477 1pfvA 551 26.55 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1w6kA 732 27.20 a.102.4.2,a.102.4.2 114271,114272 2i10A 202 29.11 a.4.1.9,a.121.1.1 136960,136961 1i58A 189 30.31 d.122.1.3 61773 2ddhA 661 31.43 a.29.3.2,a.29.3.2,e.6.1.2 131394,131395,131396 2z1mA 345 31.68 2v0cA 878 31.87 1su0B 159 33.17 d.224.1.2 106015 1h3nA 878 33.30 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 3cdlA 203 34.97 1ugpA 203 35.32 d.149.1.1 107831 1dtdA 303 36.40 c.56.5.1 33823 1ri5A 298 37.83 c.66.1.34 97502 3by4A 212 39.21 1jbaA 204 41.53 a.39.1.5 17330 2rldA 121 42.96 2bs3A 656 43.82 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1ywfA 296 45.22 c.45.1.5 124144 2bfdA 400 45.71 1r8sE 203 47.16 a.118.3.1 97248 2hp0A 466 47.80 2opwA 291 48.50 2e3bA 344 49.50 a.93.1.1 132024 1iseA 185 52.16 d.67.3.1 90691 2dorA 311 52.27 c.1.4.1 28593 3cjdA 198 53.30 1u7kA 131 54.41 a.73.1.1 113087 1h8lA 380 55.35 b.3.2.1,c.56.5.1 65737,65738 2bs2A 660 55.74 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 2fy6A 143 56.04 c.47.1.10 134344 2ieaA 886 57.50 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1dd9A 338 57.82 e.13.1.1 43254 1jdwA 423 57.87 d.126.1.2 41129 2gy9D 204 58.18 2javA 279 58.35 d.144.1.7 138243 1k7yA 577 59.23 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1m4lA 307 60.49 c.56.5.1 78604 2zcmA 192 60.51 1x8bA 289 61.31 1oneA 436 61.40 c.1.11.1,d.54.1.1 29200,38844 2ovkC 159 63.06 2h30A 164 64.19 1jf0A 195 64.43 a.39.1.5 62926 2c1lA 358 64.78 1f4lA 551 66.75 a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1gdeA 389 66.78 c.67.1.1 60456 1i0hA 205 67.91 a.2.11.1,d.44.1.1 15760,38685 1ek8A 185 68.60 d.67.3.1 59444 2i5eA 211 69.11 1vr6A 350 71.30 c.1.10.4 120439 1dbtA 239 73.59 c.1.2.3 28539 2ctc 307 73.99 1e1oA 504 74.18 b.40.4.1,d.104.1.1 25258,40714 1v2dA 381 74.44 c.67.1.1 108281 2fb2A 340 75.23 3c0iA 351 76.32 2ebdA 309 76.67 2a2fX 325 77.25 1d5nA 205 78.32 a.2.11.1,d.44.1.1 15762,38687 1qu2A 917 81.44 a.27.1.1,b.51.1.1,c.26.1.1 16925,26890,31592 1e7uA 961 82.26 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2f9sA 151 84.74 c.47.1.10 133168 3c8tA 451 84.95 3bcgA 215 86.32