# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 4.27e-62 2iagA 482 8.50e-62 3b6hA 498 1.35e-61 3c6gA 479 2.86e-61 1po5A 476 3.17e-61 a.104.1.1 94963 1tqnA 486 5.30e-61 a.104.1.1 107238 1zo4A 473 1.02e-60 2hi4A 495 1.34e-60 1nr6A 473 1.82e-60 a.104.1.1 92085 2ve3A 444 3.61e-60 2ij2A 470 5.47e-60 a.104.1.1 137449 1r9oA 477 6.46e-60 a.104.1.1 104878 1bu7A 455 6.76e-60 a.104.1.1 18937 1jmeA 455 9.17e-60 a.104.1.1 66885 1jpzA 473 1.04e-59 a.104.1.1 67069 1ea1A 455 1.84e-59 a.104.1.1 18970 3b98A 475 2.47e-59 1dt6A 473 4.58e-59 a.104.1.1 18977 1h5zA 455 1.82e-58 a.104.1.1 90622 1u13A 455 3.19e-58 a.104.1.1 107578 1x8vA 455 4.26e-58 a.104.1.1 114968 2cibA 455 3.56e-56 1izoA 417 3.03e-52 a.104.1.1 83851 1cptA 428 6.26e-52 a.104.1.1 18968 1cpt 412 3.30e-51 1qmqA 414 6.48e-51 a.104.1.1 18907 1dz4A 414 1.49e-50 a.104.1.1 18903 1phd 414 2.34e-50 2zbxA 412 2.53e-50 1jipA 403 1.27e-49 a.104.1.1 66748 3bujA 397 1.28e-49 1cmnA 402 1.33e-49 a.104.1.1 18958 2d0eA 407 1.93e-49 1rom 403 2.01e-49 2d09A 407 3.02e-49 1eupA 403 3.28e-49 a.104.1.1 18967 1jfbA 404 3.38e-49 a.104.1.1 66624 1n97A 389 3.40e-49 a.104.1.1 80335 2z3tA 425 4.41e-49 1z8oA 404 8.56e-49 a.104.1.1 124722 1f24A 402 1.22e-48 a.104.1.1 18953 1gwiA 411 5.11e-48 a.104.1.1 76364 1q5dA 419 8.76e-48 a.104.1.1 95891 1odoA 408 4.11e-46 a.104.1.1 92783 1yrcA 414 1.28e-45 a.104.1.1 123917 1s1fA 406 1.52e-45 a.104.1.1 112008 3bdzA 397 2.26e-45 1lfkA 398 3.69e-45 a.104.1.1 77926 1n40A 396 1.11e-44 a.104.1.1 79977 2uuqA 414 1.27e-44 2rfbA 343 2.12e-44 1t2bA 397 5.46e-44 1uedA 406 9.83e-44 a.104.1.1 99256 1io7A 368 6.55e-43 a.104.1.1 18971 1f4tA 368 8.13e-43 a.104.1.1 18973 2fr7A 412 2.25e-39 1a6i 217 1.381 2scpA 174 2.343 a.39.1.5 17256 2of7A 260 5.265 2is6A 680 5.616 3b81A 203 9.579 2dg7A 195 9.99 2zb9A 214 10.59 2c1lA 358 11.51 1zcbA 362 16.14 a.66.1.1,c.37.1.8 124901,124902 1jyeA 349 16.62 c.93.1.1 67455 1jf0A 195 16.90 a.39.1.5 62926 3craA 265 17.00 3crjA 199 19.36 1pbgA 468 19.85 c.1.8.4 28946 2ggtA 164 19.97 c.47.1.10 135156 1pscA 365 21.68 c.1.9.3 29058 1f20A 435 21.87 b.43.4.1,c.25.1.4 64932,64933 2parA 201 22.01 1hqvA 191 22.84 a.39.1.8 61160 2i10A 202 24.58 a.4.1.9,a.121.1.1 136960,136961 1i0dA 332 25.22 c.1.9.3 61487 2bo9A 308 25.71 c.56.5.1 128897 1w6kA 732 26.41 a.102.4.2,a.102.4.2 114271,114272 2hyxA 352 30.36 1gsaA 316 31.17 c.30.1.3,d.142.1.1 31718,41477 2yy8A 201 31.27 1eywA 331 31.49 c.1.9.3 29057 1pfvA 551 32.75 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2qtzA 539 33.65 1pjrA 724 34.12 c.37.1.19,c.37.1.19 32391,32392 1qguB 519 34.74 c.92.2.3 35626 2rasA 212 37.42 1e8xA 961 41.24 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1z5rA 306 41.72 c.56.5.1 124488 2iekA 200 42.40 1kyzA 365 44.38 a.4.5.29,c.66.1.12 73312,73313 1omrA 201 45.45 a.39.1.5 93349 2fq4A 192 45.46 a.4.1.9,a.121.1.1 133937,133938 1bf6A 291 46.29 c.1.9.3 29065 1bs2A 607 46.73 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 3cjsB 72 47.29 1t15A 214 48.80 c.15.1.3,c.15.1.3 99067,99068 1w2xA 758 51.15 c.14.1.4,c.14.1.4 109134,109135 1i58A 189 57.21 d.122.1.3 61773 1oneA 436 59.20 c.1.11.1,d.54.1.1 29200,38844 1ni4A 365 59.61 c.36.1.11 85728 1e7uA 961 60.06 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1kczA 413 62.50 c.1.11.2,d.54.1.1 68451,68452 2pbxA 203 62.85 1i5nA 146 63.56 a.24.10.3 61805 1b16A 254 64.22 c.2.1.2 29875 1ha1 184 64.32 3bq3A 270 64.41 2fymA 431 64.93 c.1.11.1,d.54.1.1 134379,134380 1iseA 185 71.31 d.67.3.1 90691 3cdlA 203 73.74 1ev0A 58 76.60 d.71.1.1 39594 1sjyA 159 76.61 d.113.1.1 98900 1dhs 344 76.71 2adbA 148 77.37 d.58.7.1 126581 2iw0A 254 77.48 c.6.2.3 137737 1h5qA 265 77.56 c.2.1.2 60643 2e3bA 344 78.51 a.93.1.1 132024 1q08A 99 78.77 a.6.1.3 95497 2o7tA 199 81.61 2rebA 352 82.81 c.37.1.11,d.48.1.1 32282,38767 2ccmA 191 83.37 2bs3A 656 84.26 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1ffyA 917 84.33 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2pgsA 451 84.69 2raeA 207 85.66 2rauA 354 85.88 2hytA 197 87.16 1qwgA 251 87.16 c.1.27.1 96473 2p67A 341 87.80 1o4tA 133 88.32 b.82.1.9 86622 3c5mA 396 88.51 1p9bA 442 88.64 c.37.1.10 94385 2fncA 381 88.65 2f9sA 151 88.67 c.47.1.10 133168