# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 2.99e-50 3b6hA 498 8.48e-50 3c6gA 479 1.38e-49 1po5A 476 1.58e-49 a.104.1.1 94963 2iagA 482 1.67e-49 2hi4A 495 1.81e-49 1bu7A 455 2.68e-49 a.104.1.1 18937 1zo4A 473 4.20e-49 1ea1A 455 6.36e-49 a.104.1.1 18970 1tqnA 486 6.77e-49 a.104.1.1 107238 1nr6A 473 7.04e-49 a.104.1.1 92085 1jmeA 455 2.14e-48 a.104.1.1 66885 1jpzA 473 2.26e-48 a.104.1.1 67069 2ve3A 444 2.78e-48 3b98A 475 3.24e-48 2ij2A 470 3.42e-48 a.104.1.1 137449 1r9oA 477 5.08e-48 a.104.1.1 104878 1h5zA 455 8.13e-48 a.104.1.1 90622 1dt6A 473 1.47e-47 a.104.1.1 18977 1x8vA 455 1.78e-47 a.104.1.1 114968 1u13A 455 2.58e-47 a.104.1.1 107578 2cibA 455 2.80e-45 1izoA 417 3.04e-42 a.104.1.1 83851 1cptA 428 8.66e-42 a.104.1.1 18968 3bujA 397 2.04e-41 1qmqA 414 2.39e-41 a.104.1.1 18907 1cpt 412 3.20e-41 1dz4A 414 7.50e-41 a.104.1.1 18903 1phd 414 1.34e-40 2d0eA 407 1.58e-40 2zbxA 412 1.64e-40 1n97A 389 3.12e-40 a.104.1.1 80335 1jipA 403 4.33e-40 a.104.1.1 66748 1cmnA 402 7.68e-40 a.104.1.1 18958 2d09A 407 9.76e-40 1rom 403 1.50e-39 1jfbA 404 1.63e-39 a.104.1.1 66624 2z3tA 425 1.78e-39 1eupA 403 1.94e-39 a.104.1.1 18967 1z8oA 404 3.43e-39 a.104.1.1 124722 1f24A 402 4.31e-39 a.104.1.1 18953 1gwiA 411 7.14e-39 a.104.1.1 76364 1q5dA 419 2.11e-38 a.104.1.1 95891 2uuqA 414 9.11e-38 1s1fA 406 2.02e-37 a.104.1.1 112008 3bdzA 397 3.69e-37 1odoA 408 5.86e-37 a.104.1.1 92783 1yrcA 414 8.43e-37 a.104.1.1 123917 2rfbA 343 2.38e-36 1lfkA 398 2.82e-36 a.104.1.1 77926 1n40A 396 4.88e-36 a.104.1.1 79977 1t2bA 397 2.25e-35 1uedA 406 2.54e-35 a.104.1.1 99256 1f4tA 368 5.06e-35 a.104.1.1 18973 1io7A 368 1.17e-34 a.104.1.1 18971 2fr7A 412 9.03e-33 1ppjB 439 2.724 d.185.1.1,d.185.1.1 104254,104255 1a6i 217 2.994 1eywA 331 3.401 c.1.9.3 29057 1dd9A 338 3.450 e.13.1.1 43254 1hr6B 443 8.174 d.185.1.1,d.185.1.1 61166,61167 1f20A 435 8.194 b.43.4.1,c.25.1.4 64932,64933 1ni4A 365 8.276 c.36.1.11 85728 2scpA 174 8.763 a.39.1.5 17256 1pscA 365 9.059 c.1.9.3 29058 1jvnA 555 9.201 c.1.2.1,c.23.16.1 67355,67356 4mbp 370 10.96 2of7A 260 11.30 2o0mA 345 12.50 1e7uA 961 12.69 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1i0dA 332 12.75 c.1.9.3 61487 2is6A 680 12.97 1z5rA 306 13.16 c.56.5.1 124488 3clqA 421 16.32 1ffyA 917 16.34 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1ygeA 839 16.38 a.119.1.1,b.12.1.1 19234,23634 3craA 265 16.65 2zb9A 214 17.03 2rebA 352 17.13 c.37.1.11,d.48.1.1 32282,38767 1ytvA 366 17.63 c.94.1.1 124016 3b81A 203 18.33 2j0fA 482 18.76 2i10A 202 19.11 a.4.1.9,a.121.1.1 136960,136961 3crjA 199 19.16 2dg7A 195 20.20 1jf0A 195 21.34 a.39.1.5 62926 1jyeA 349 22.33 c.93.1.1 67455 2e3bA 344 22.87 a.93.1.1 132024 1dtdA 303 22.94 c.56.5.1 33823 1uqwA 509 23.21 c.94.1.1 99799 1wl9A 440 24.00 c.55.2.1,d.127.1.1 120998,120999 1kcxA 518 25.35 b.92.1.3,c.1.9.6 90953,90954 2c1lA 358 25.93 1aopA 497 26.02 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2sas 185 26.73 1eu8A 409 26.78 c.94.1.1 59502 1hyuA 521 26.90 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1hjsA 332 28.12 c.1.8.3 83492 2pbxA 203 29.09 1uaaA 673 29.54 c.37.1.19,c.37.1.19 32401,32402 2fp4B 395 30.31 c.23.4.1,d.142.1.4 133897,133898 2vafA 378 30.36 1rpa 342 30.92 1pfvA 551 31.57 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2fq4A 192 31.94 a.4.1.9,a.121.1.1 133937,133938 2pa6A 427 32.23 3bcgA 215 32.75 2sasA 185 34.59 a.39.1.5 17258 1qu2A 917 34.80 a.27.1.1,b.51.1.1,c.26.1.1 16925,26890,31592 1jeqA 609 36.20 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 1ek8A 185 37.26 d.67.3.1 59444 1kczA 413 38.08 c.1.11.2,d.54.1.1 68451,68452 1ohvA 472 38.28 c.67.1.4 93031 1fobA 334 38.52 c.1.8.3 83255 2a2fX 325 39.29 2iw0A 254 39.30 c.6.2.3 137737 1jf2A 195 40.54 a.39.1.5 62930 2rasA 212 40.75 2parA 201 42.01 1ta9A 450 42.04 1p9bA 442 42.47 c.37.1.10 94385 1aeiA 315 43.06 a.65.1.1 18180 2al1A 436 44.97 c.1.11.1,d.54.1.1 126949,126950 1jbwA 428 49.77 c.59.1.2,c.72.2.2 62860,62861 1aye 401 50.68 1uh4A 637 51.08 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 2f9sA 151 52.20 c.47.1.10 133168 2di4A 238 53.86 a.269.1.1 131522 1kvkA 395 53.91 d.14.1.5,d.58.26.3 73060,73061 2hyxA 352 54.34 2chuA 296 54.87 c.92.2.4 130485 2hytA 197 57.90 2yy8A 201 58.64 2iekA 200 58.70 1vr6A 350 58.87 c.1.10.4 120439 1hqvA 191 58.95 a.39.1.8 61160 1m4lA 307 59.71 c.56.5.1 78604 1q08A 99 59.92 a.6.1.3 95497 3bq3A 270 61.43 1a0eA 443 61.49 c.1.15.3 29537 1v4vA 376 63.70 c.87.1.3 100313 1w2xA 758 64.41 c.14.1.4,c.14.1.4 109134,109135 2bfdA 400 64.92 1eejA 216 64.94 c.47.1.9,d.17.3.1 33057,38071 1zu0A 529 65.94 3pga1 337 66.03 1bkdS 439 66.47 a.117.1.1 19111 2qm1A 326 66.99 2ggtA 164 67.23 c.47.1.10 135156 2bwvA 440 67.35 c.55.2.1,d.127.1.1 129387,129388 1ci9A 392 67.60 e.3.1.1 64767 1sjyA 159 67.96 d.113.1.1 98900 1f0jA 377 68.55 a.211.1.2 19346 1ei6A 406 69.44 c.76.1.4 90443 2i49A 429 69.99 1a99A 344 70.31 c.94.1.1 35812 1yljA 263 70.34 1asyA 490 70.61 b.40.4.1,d.104.1.1 25242,40763 1iq0A 592 70.63 a.27.1.1,c.26.1.1,d.67.2.1 66257,66258,66259 1iseA 185 70.91 d.67.3.1 90691 2z1mA 345 71.48 2ia1A 178 71.83 1r6uA 437 72.06 c.26.1.1 97163 1eqnA 321 74.15 e.13.1.1 43256 3bgaA 1010 74.23 2fymA 431 74.26 c.1.11.1,d.54.1.1 134379,134380 2qjvA 270 75.45 2p25A 126 76.22 2ejwA 332 76.80 1ha1 184 78.39 2ivnA 330 79.39 2p67A 341 79.91 1qguB 519 79.91 c.92.2.3 35626 1omrA 201 80.26 a.39.1.5 93349 2akzA 439 80.88 c.1.11.1,d.54.1.1 126944,126945 1gg4A 452 81.27 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1xw2A 405 82.18 a.102.1.2 122389 2czlA 272 82.30 c.94.1.1 131055 1lycA 343 82.60 a.93.1.1 74344 1gsaA 316 83.03 c.30.1.3,d.142.1.1 31718,41477 1is1A 185 83.64 d.67.3.1 83704 1gnd 447 84.00 1i58A 189 84.22 d.122.1.3 61773 2ntxA 365 84.38 1qycA 308 86.05 c.2.1.2 96581