# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 4.75e-64 2iagA 482 1.17e-63 3b6hA 498 1.88e-63 3c6gA 479 3.78e-63 1po5A 476 4.12e-63 a.104.1.1 94963 1tqnA 486 9.39e-63 a.104.1.1 107238 1zo4A 473 1.47e-62 2hi4A 495 1.93e-62 1nr6A 473 3.09e-62 a.104.1.1 92085 2ve3A 444 5.68e-62 2ij2A 470 6.56e-62 a.104.1.1 137449 1r9oA 477 9.17e-62 a.104.1.1 104878 1bu7A 455 1.04e-61 a.104.1.1 18937 1jmeA 455 1.29e-61 a.104.1.1 66885 1jpzA 473 1.42e-61 a.104.1.1 67069 1ea1A 455 1.53e-61 a.104.1.1 18970 3b98A 475 4.38e-61 1dt6A 473 8.72e-61 a.104.1.1 18977 1h5zA 455 1.50e-60 a.104.1.1 90622 1u13A 455 3.21e-60 a.104.1.1 107578 1x8vA 455 4.50e-60 a.104.1.1 114968 2cibA 455 3.47e-58 1izoA 417 6.32e-54 a.104.1.1 83851 1cptA 428 1.39e-53 a.104.1.1 18968 1cpt 412 6.79e-53 1qmqA 414 1.39e-52 a.104.1.1 18907 1dz4A 414 2.98e-52 a.104.1.1 18903 1phd 414 6.05e-52 2zbxA 412 8.61e-52 3bujA 397 2.76e-51 1jipA 403 3.40e-51 a.104.1.1 66748 2d0eA 407 4.34e-51 1cmnA 402 4.96e-51 a.104.1.1 18958 2d09A 407 6.63e-51 1n97A 389 9.89e-51 a.104.1.1 80335 1rom 403 1.02e-50 1eupA 403 1.08e-50 a.104.1.1 18967 2z3tA 425 1.25e-50 1jfbA 404 1.29e-50 a.104.1.1 66624 1z8oA 404 2.69e-50 a.104.1.1 124722 1f24A 402 4.34e-50 a.104.1.1 18953 1gwiA 411 1.19e-49 a.104.1.1 76364 1q5dA 419 2.62e-49 a.104.1.1 95891 1odoA 408 2.02e-47 a.104.1.1 92783 1s1fA 406 5.82e-47 a.104.1.1 112008 1yrcA 414 6.59e-47 a.104.1.1 123917 3bdzA 397 8.42e-47 1lfkA 398 1.56e-46 a.104.1.1 77926 1n40A 396 3.95e-46 a.104.1.1 79977 2uuqA 414 5.36e-46 2rfbA 343 9.44e-46 1t2bA 397 2.01e-45 1uedA 406 3.62e-45 a.104.1.1 99256 1io7A 368 3.33e-44 a.104.1.1 18971 1f4tA 368 3.85e-44 a.104.1.1 18973 2fr7A 412 1.73e-40 1a6i 217 1.656 2scpA 174 3.513 a.39.1.5 17256 2is6A 680 3.687 2of7A 260 6.059 1jyeA 349 10.50 c.93.1.1 67455 2dg7A 195 10.73 2zb9A 214 11.95 2c1lA 358 13.11 3b81A 203 13.31 2i10A 202 16.88 a.4.1.9,a.121.1.1 136960,136961 1zcbA 362 18.47 a.66.1.1,c.37.1.8 124901,124902 3crjA 199 22.71 1f20A 435 22.76 b.43.4.1,c.25.1.4 64932,64933 3craA 265 22.92 1pscA 365 23.63 c.1.9.3 29058 1pbgA 468 23.87 c.1.8.4 28946 1pjrA 724 24.08 c.37.1.19,c.37.1.19 32391,32392 1jf0A 195 25.02 a.39.1.5 62926 2parA 201 25.05 2bo9A 308 25.19 c.56.5.1 128897 2yy8A 201 25.30 1hqvA 191 29.64 a.39.1.8 61160 1i0dA 332 31.28 c.1.9.3 61487 1kyzA 365 32.62 a.4.5.29,c.66.1.12 73312,73313 1eywA 331 32.91 c.1.9.3 29057 2ggtA 164 33.15 c.47.1.10 135156 3cjsB 72 33.43 1qguB 519 33.79 c.92.2.3 35626 2qtzA 539 35.55 1t15A 214 39.23 c.15.1.3,c.15.1.3 99067,99068 1z5rA 306 39.54 c.56.5.1 124488 1gsaA 316 41.01 c.30.1.3,d.142.1.1 31718,41477 1dhs 344 41.10 1i58A 189 41.89 d.122.1.3 61773 1bs2A 607 42.11 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 2rasA 212 43.55 1oneA 436 44.88 c.1.11.1,d.54.1.1 29200,38844 1w2xA 758 45.83 c.14.1.4,c.14.1.4 109134,109135 1bf6A 291 46.49 c.1.9.3 29065 2rauA 354 48.74 1omrA 201 51.89 a.39.1.5 93349 2p67A 341 52.36 1b16A 254 52.81 c.2.1.2 29875 2fymA 431 53.49 c.1.11.1,d.54.1.1 134379,134380 2hyxA 352 54.35 2iekA 200 54.90 2fq4A 192 56.69 a.4.1.9,a.121.1.1 133937,133938 1p9bA 442 59.66 c.37.1.10 94385 1sjyA 159 61.38 d.113.1.1 98900 3bq3A 270 62.89 1ni4A 365 63.47 c.36.1.11 85728 1pfvA 551 63.93 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2hytA 197 66.40 1iseA 185 66.74 d.67.3.1 90691 2e3bA 344 67.20 a.93.1.1 132024 2nxnB 147 68.70 3cdlA 203 73.83 1ev0A 58 74.43 d.71.1.1 39594 2rebA 352 74.79 c.37.1.11,d.48.1.1 32282,38767 1ha1 184 75.26 1qu7A 227 75.35 h.4.5.1 45789 1jf2A 195 75.78 a.39.1.5 62930 1w6kA 732 75.95 a.102.4.2,a.102.4.2 114271,114272 1q08A 99 77.13 a.6.1.3 95497 1k8uA 90 78.38 a.39.1.2 72181 2pgsA 451 82.44 2p25A 126 82.80 2pbxA 203 82.85 2ntxA 365 83.66 1binA 143 84.96 a.1.1.2 15231 1i5nA 146 85.59 a.24.10.3 61805 1axn 323 86.12 2fb2A 340 86.84 1ffyA 917 87.55 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2qjvA 270 89.74