# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 1.05e-64 2iagA 482 1.08e-64 3b6hA 498 1.59e-64 1tqnA 486 8.00e-64 a.104.1.1 107238 1po5A 476 9.56e-64 a.104.1.1 94963 3c6gA 479 1.30e-63 2hi4A 495 2.11e-63 1zo4A 473 3.49e-63 2ve3A 444 4.85e-63 1nr6A 473 8.79e-63 a.104.1.1 92085 1dt6A 473 1.05e-62 a.104.1.1 18977 2ij2A 470 1.54e-62 a.104.1.1 137449 1r9oA 477 1.72e-62 a.104.1.1 104878 1ea1A 455 4.11e-62 a.104.1.1 18970 1jpzA 473 4.57e-62 a.104.1.1 67069 1bu7A 455 4.75e-62 a.104.1.1 18937 1jmeA 455 4.92e-62 a.104.1.1 66885 3b98A 475 9.76e-62 1h5zA 455 1.71e-61 a.104.1.1 90622 1u13A 455 4.08e-61 a.104.1.1 107578 1x8vA 455 8.33e-61 a.104.1.1 114968 2cibA 455 5.68e-59 1izoA 417 2.72e-55 a.104.1.1 83851 1cptA 428 1.28e-54 a.104.1.1 18968 1cpt 412 5.36e-54 1qmqA 414 2.27e-53 a.104.1.1 18907 1phd 414 3.48e-53 1dz4A 414 3.78e-53 a.104.1.1 18903 2zbxA 412 1.46e-52 1cmnA 402 6.98e-52 a.104.1.1 18958 2d0eA 407 1.39e-51 1jipA 403 1.43e-51 a.104.1.1 66748 1jfbA 404 1.43e-51 a.104.1.1 66624 3bujA 397 1.63e-51 1rom 403 2.11e-51 2d09A 407 2.44e-51 2z3tA 425 3.06e-51 1n97A 389 3.13e-51 a.104.1.1 80335 1f24A 402 4.98e-51 a.104.1.1 18953 1eupA 403 5.88e-51 a.104.1.1 18967 1z8oA 404 1.89e-50 a.104.1.1 124722 1q5dA 419 4.66e-50 a.104.1.1 95891 1gwiA 411 6.32e-50 a.104.1.1 76364 1yrcA 414 3.87e-48 a.104.1.1 123917 1s1fA 406 1.43e-47 a.104.1.1 112008 1odoA 408 2.28e-47 a.104.1.1 92783 1lfkA 398 3.52e-47 a.104.1.1 77926 3bdzA 397 4.29e-47 1n40A 396 1.46e-46 a.104.1.1 79977 2uuqA 414 1.67e-46 2rfbA 343 2.28e-46 1uedA 406 2.91e-46 a.104.1.1 99256 1t2bA 397 2.44e-45 1f4tA 368 2.47e-45 a.104.1.1 18973 1io7A 368 3.81e-45 a.104.1.1 18971 2fr7A 412 1.08e-41 1a6i 217 2.197 2of7A 260 3.802 2zb9A 214 6.701 3b81A 203 9.414 1jyeA 349 10.70 c.93.1.1 67455 1f20A 435 12.79 b.43.4.1,c.25.1.4 64932,64933 1omrA 201 13.99 a.39.1.5 93349 2scpA 174 14.73 a.39.1.5 17256 1w6kA 732 15.01 a.102.4.2,a.102.4.2 114271,114272 2c1lA 358 15.36 1pscA 365 16.09 c.1.9.3 29058 3crjA 199 16.21 2bo9A 308 18.43 c.56.5.1 128897 2dg7A 195 18.54 1pjrA 724 20.07 c.37.1.19,c.37.1.19 32391,32392 2rebA 352 21.03 c.37.1.11,d.48.1.1 32282,38767 2pbxA 203 23.00 2hyxA 352 23.40 1z5rA 306 23.99 c.56.5.1 124488 1bs2A 607 24.81 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 1hqvA 191 25.84 a.39.1.8 61160 2i49A 429 26.03 1eywA 331 28.22 c.1.9.3 29057 1i0dA 332 29.14 c.1.9.3 61487 2iw0A 254 30.12 c.6.2.3 137737 1qguB 519 30.83 c.92.2.3 35626 2parA 201 32.11 1qpzA 340 32.45 a.35.1.5,c.93.1.1 17097,35673 2i10A 202 33.67 a.4.1.9,a.121.1.1 136960,136961 1njgA 250 34.52 c.37.1.20 85785 1ni4A 365 37.66 c.36.1.11 85728 2ggtA 164 38.23 c.47.1.10 135156 1jf0A 195 38.55 a.39.1.5 62926 1t2aA 375 41.33 c.2.1.2 99078 1vpwA 340 41.83 a.35.1.5,c.93.1.1 17087,35680 2i7xA 717 42.24 1kb9A 431 42.64 d.185.1.1,d.185.1.1 77311,77312 1f0jA 377 45.67 a.211.1.2 19346 1gm7A 209 45.76 d.153.1.2 65302 1bf6A 291 45.85 c.1.9.3 29065 3craA 265 47.37 3cjdA 198 48.25 2bs3A 656 48.55 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1iseA 185 49.55 d.67.3.1 90691 1e8xA 961 49.75 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1ek8A 185 49.90 d.67.3.1 59444 1bavA 309 49.95 c.56.5.1 33806 2g29A 417 50.18 1zcbA 362 50.20 a.66.1.1,c.37.1.8 124901,124902 1ha1 184 50.93 1ev0A 58 50.99 d.71.1.1 39594 2rauA 354 51.78 2raeA 207 52.28 2fncA 381 53.69 1rpnA 335 54.56 c.2.1.2 97708 1kczA 413 55.54 c.1.11.2,d.54.1.1 68451,68452 1z7bA 358 55.72 c.2.1.2 124599 1uqwA 509 56.08 c.94.1.1 99799 1gsaA 316 56.69 c.30.1.3,d.142.1.1 31718,41477 2iekA 200 56.84 1dbqA 289 57.38 c.93.1.1 35666 2pzmA 330 58.47 1kyzA 365 59.12 a.4.5.29,c.66.1.12 73312,73313 1dd9A 338 60.67 e.13.1.1 43254 2glcA 342 60.70 2qtzA 539 61.05 2o7tA 199 63.02 1l3kA 196 66.11 d.58.7.1,d.58.7.1 73539,73540 2fq4A 192 66.56 a.4.1.9,a.121.1.1 133937,133938 1m4lA 307 68.84 c.56.5.1 78604 2rasA 212 68.99 1t15A 214 69.67 c.15.1.3,c.15.1.3 99067,99068 1dd5A 185 70.78 d.67.3.1 39564 1b16A 254 70.93 c.2.1.2 29875 2e3bA 344 73.90 a.93.1.1 132024 2izzA 322 74.80 1dtdA 303 76.83 c.56.5.1 33823 1uehA 253 76.89 c.101.1.1 99259 1x19A 359 77.14 1rktA 205 78.55 a.4.1.9,a.121.1.1 97623,97624 2ctc 307 79.15 1zcaA 359 80.05 a.66.1.1,c.37.1.8 124897,124898 2yy7A 312 80.36 1e7uA 961 80.53 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1t56A 216 82.54 a.4.1.9,a.121.1.1 106428,106429 2p36A 335 82.83 1oneA 436 84.51 c.1.11.1,d.54.1.1 29200,38844 3c5mA 396 84.77 2z1mA 345 84.87 1pbgA 468 84.92 c.1.8.4 28946 2hrzA 342 86.76 2vprA 207 88.20 1is1A 185 88.68 d.67.3.1 83704