# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 1.41e-60 2iagA 482 1.89e-60 3b6hA 498 3.51e-60 3c6gA 479 6.76e-60 1po5A 476 1.45e-59 a.104.1.1 94963 1tqnA 486 1.49e-59 a.104.1.1 107238 1zo4A 473 1.79e-59 2ve3A 444 3.29e-59 2hi4A 495 3.30e-59 2ij2A 470 4.98e-59 a.104.1.1 137449 1nr6A 473 7.47e-59 a.104.1.1 92085 1r9oA 477 1.26e-58 a.104.1.1 104878 1bu7A 455 1.61e-58 a.104.1.1 18937 1jpzA 473 1.85e-58 a.104.1.1 67069 1jmeA 455 2.00e-58 a.104.1.1 66885 1dt6A 473 2.93e-58 a.104.1.1 18977 1ea1A 455 4.35e-58 a.104.1.1 18970 3b98A 475 5.78e-58 1h5zA 455 2.48e-57 a.104.1.1 90622 1u13A 455 4.06e-57 a.104.1.1 107578 1x8vA 455 8.21e-57 a.104.1.1 114968 2cibA 455 2.70e-55 1izoA 417 1.57e-51 a.104.1.1 83851 1cptA 428 3.00e-51 a.104.1.1 18968 1cpt 412 1.35e-50 1qmqA 414 8.78e-50 a.104.1.1 18907 1phd 414 1.27e-49 1dz4A 414 1.35e-49 a.104.1.1 18903 2zbxA 412 5.87e-49 1cmnA 402 1.20e-48 a.104.1.1 18958 1jfbA 404 1.51e-48 a.104.1.1 66624 2d0eA 407 1.82e-48 1rom 403 2.14e-48 1jipA 403 2.34e-48 a.104.1.1 66748 1n97A 389 2.38e-48 a.104.1.1 80335 2d09A 407 2.76e-48 3bujA 397 3.67e-48 2z3tA 425 4.10e-48 1f24A 402 5.64e-48 a.104.1.1 18953 1eupA 403 7.40e-48 a.104.1.1 18967 1z8oA 404 2.29e-47 a.104.1.1 124722 1gwiA 411 3.44e-47 a.104.1.1 76364 1q5dA 419 1.03e-46 a.104.1.1 95891 1yrcA 414 3.05e-45 a.104.1.1 123917 1s1fA 406 7.99e-45 a.104.1.1 112008 1odoA 408 1.13e-44 a.104.1.1 92783 1lfkA 398 2.91e-44 a.104.1.1 77926 3bdzA 397 4.05e-44 2rfbA 343 6.69e-44 2uuqA 414 7.62e-44 1n40A 396 7.89e-44 a.104.1.1 79977 1uedA 406 4.28e-43 a.104.1.1 99256 1f4tA 368 1.29e-42 a.104.1.1 18973 1t2bA 397 1.48e-42 1io7A 368 1.72e-42 a.104.1.1 18971 2fr7A 412 3.68e-39 2of7A 260 1.764 2zb9A 214 2.170 3b81A 203 2.196 1a6i 217 3.008 1pjrA 724 6.237 c.37.1.19,c.37.1.19 32391,32392 2pbxA 203 6.346 3crjA 199 9.558 2scpA 174 10.44 a.39.1.5 17256 2parA 201 13.54 1pscA 365 15.09 c.1.9.3 29058 2rasA 212 16.03 2dg7A 195 16.49 2bo9A 308 16.57 c.56.5.1 128897 1hqvA 191 18.16 a.39.1.8 61160 2hyxA 352 19.02 1bs2A 607 20.50 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 1i0dA 332 20.61 c.1.9.3 61487 1eywA 331 22.75 c.1.9.3 29057 2i10A 202 23.62 a.4.1.9,a.121.1.1 136960,136961 1ev0A 58 24.20 d.71.1.1 39594 1jf0A 195 24.46 a.39.1.5 62926 1bf6A 291 24.89 c.1.9.3 29065 2is6A 680 25.24 1w6kA 732 25.95 a.102.4.2,a.102.4.2 114271,114272 1ni4A 365 26.56 c.36.1.11 85728 2c1lA 358 26.63 2raeA 207 27.06 1f20A 435 27.75 b.43.4.1,c.25.1.4 64932,64933 1dpeA 507 29.36 c.94.1.1 35799 2ggtA 164 30.28 c.47.1.10 135156 2o7tA 199 30.43 1zcbA 362 31.03 a.66.1.1,c.37.1.8 124901,124902 1z5rA 306 31.89 c.56.5.1 124488 1vpwA 340 34.16 a.35.1.5,c.93.1.1 17087,35680 1njgA 250 34.80 c.37.1.20 85785 1qguB 519 34.89 c.92.2.3 35626 1rktA 205 35.56 a.4.1.9,a.121.1.1 97623,97624 1omrA 201 39.07 a.39.1.5 93349 1i58A 189 41.70 d.122.1.3 61773 1t33A 224 43.30 a.4.1.9,a.121.1.1 106295,106296 3craA 265 44.63 1pbgA 468 44.82 c.1.8.4 28946 1w7jB 151 46.86 a.39.1.5 120690 1z7bA 358 49.91 c.2.1.2 124599 3cjsB 72 50.14 1b3uA 588 50.38 a.118.1.2 19135 1ek8A 185 53.64 d.67.3.1 59444 2iekA 200 54.22 2qjvA 270 55.11 2fncA 381 56.22 2qtzA 539 56.26 1iseA 185 56.64 d.67.3.1 90691 2gu9A 113 56.88 1jyeA 349 59.49 c.93.1.1 67455 1kczA 413 59.57 c.1.11.2,d.54.1.1 68451,68452 3cjdA 198 60.66 4cpvA 108 61.02 a.39.1.4 17198 1gsaA 316 61.78 c.30.1.3,d.142.1.1 31718,41477 2e3bA 344 62.88 a.93.1.1 132024 1zkgA 212 63.51 a.4.1.9,a.121.1.1 125194,125195 1zcaA 359 66.23 a.66.1.1,c.37.1.8 124897,124898 1gm7A 209 66.80 d.153.1.2 65302 1qrjB 199 68.35 a.28.3.1 16952 1x19A 359 71.02 2fq4A 192 71.97 a.4.1.9,a.121.1.1 133937,133938 2ccmA 191 72.95 1pfvA 551 74.16 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1v0wA 506 75.11 d.136.1.2,d.136.1.2 108220,108221 2rauA 354 75.29 1o4tA 133 76.80 b.82.1.9 86622 1dd5A 185 76.97 d.67.3.1 39564 2ovkC 159 77.77 1e8xA 961 77.94 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 2vprA 207 78.74 2q5iA 691 79.71 2gm6A 208 81.28 1w9yA 319 81.81 b.82.2.1 120801 2p25A 126 81.98 1fjmA 330 84.14 d.159.1.3 42082 1qpzA 340 85.41 a.35.1.5,c.93.1.1 17097,35673 2d2jA 329 88.06 c.1.9.3 131175 1b16A 254 89.07 c.2.1.2 29875 1oneA 436 89.33 c.1.11.1,d.54.1.1 29200,38844 1p9bA 442 89.48 c.37.1.10 94385