# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 2.69e-59 2iagA 482 3.51e-59 3b6hA 498 6.43e-59 3c6gA 479 1.12e-58 1tqnA 486 1.25e-58 a.104.1.1 107238 1po5A 476 2.00e-58 a.104.1.1 94963 1zo4A 473 3.51e-58 2ve3A 444 4.79e-58 2hi4A 495 6.60e-58 2ij2A 470 9.61e-58 a.104.1.1 137449 1r9oA 477 2.20e-57 a.104.1.1 104878 1dt6A 473 4.00e-57 a.104.1.1 18977 1jpzA 473 4.32e-57 a.104.1.1 67069 1bu7A 455 4.56e-57 a.104.1.1 18937 1nr6A 473 4.63e-57 a.104.1.1 92085 1jmeA 455 5.64e-57 a.104.1.1 66885 1ea1A 455 1.13e-56 a.104.1.1 18970 3b98A 475 1.29e-56 1h5zA 455 2.83e-56 a.104.1.1 90622 1u13A 455 8.66e-56 a.104.1.1 107578 1x8vA 455 1.47e-55 a.104.1.1 114968 2cibA 455 3.63e-54 1izoA 417 1.10e-50 a.104.1.1 83851 1cptA 428 2.88e-50 a.104.1.1 18968 1cpt 412 9.31e-50 1qmqA 414 3.71e-49 a.104.1.1 18907 1dz4A 414 8.11e-49 a.104.1.1 18903 1phd 414 8.74e-49 2zbxA 412 2.91e-48 1cmnA 402 1.17e-47 a.104.1.1 18958 3bujA 397 1.64e-47 2d0eA 407 1.80e-47 1jfbA 404 2.01e-47 a.104.1.1 66624 1rom 403 2.16e-47 2z3tA 425 2.95e-47 1jipA 403 3.01e-47 a.104.1.1 66748 2d09A 407 3.21e-47 1n97A 389 3.95e-47 a.104.1.1 80335 1eupA 403 6.00e-47 a.104.1.1 18967 1f24A 402 6.42e-47 a.104.1.1 18953 1z8oA 404 1.85e-46 a.104.1.1 124722 1gwiA 411 3.93e-46 a.104.1.1 76364 1q5dA 419 7.29e-46 a.104.1.1 95891 1yrcA 414 1.72e-44 a.104.1.1 123917 1odoA 408 9.66e-44 a.104.1.1 92783 3bdzA 397 1.00e-43 1s1fA 406 1.09e-43 a.104.1.1 112008 1lfkA 398 1.98e-43 a.104.1.1 77926 1n40A 396 5.13e-43 a.104.1.1 79977 2uuqA 414 6.56e-43 2rfbA 343 7.37e-43 1uedA 406 2.77e-42 a.104.1.1 99256 1t2bA 397 5.80e-42 1f4tA 368 6.88e-42 a.104.1.1 18973 1io7A 368 8.18e-42 a.104.1.1 18971 2fr7A 412 2.93e-38 1a6i 217 2.590 3b81A 203 2.830 2of7A 260 3.456 2zb9A 214 3.757 2pbxA 203 6.453 1pjrA 724 8.331 c.37.1.19,c.37.1.19 32391,32392 2scpA 174 8.808 a.39.1.5 17256 1bs2A 607 9.261 a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 3crjA 199 9.771 2bo9A 308 11.59 c.56.5.1 128897 1vpwA 340 14.86 a.35.1.5,c.93.1.1 17087,35680 2dg7A 195 15.28 1f20A 435 17.00 b.43.4.1,c.25.1.4 64932,64933 2hyxA 352 17.79 2is6A 680 21.51 1ek8A 185 23.54 d.67.3.1 59444 1qpzA 340 24.00 a.35.1.5,c.93.1.1 17097,35673 2fncA 381 25.08 2o7tA 199 25.21 2c1lA 358 25.80 1hqvA 191 28.02 a.39.1.8 61160 1qguB 519 28.48 c.92.2.3 35626 1pbgA 468 29.28 c.1.8.4 28946 1iseA 185 30.10 d.67.3.1 90691 1z5rA 306 31.71 c.56.5.1 124488 1jyeA 349 31.84 c.93.1.1 67455 2parA 201 32.04 2ggtA 164 32.67 c.47.1.10 135156 1l3kA 196 34.03 d.58.7.1,d.58.7.1 73539,73540 1ev0A 58 34.34 d.71.1.1 39594 1w6kA 732 34.38 a.102.4.2,a.102.4.2 114271,114272 2iekA 200 34.65 1ha1 184 35.46 2i10A 202 36.00 a.4.1.9,a.121.1.1 136960,136961 1pscA 365 36.27 c.1.9.3 29058 1omrA 201 36.70 a.39.1.5 93349 2rasA 212 36.72 1t33A 224 37.47 a.4.1.9,a.121.1.1 106295,106296 2raeA 207 39.08 1ni4A 365 39.28 c.36.1.11 85728 1gsaA 316 41.75 c.30.1.3,d.142.1.1 31718,41477 2p67A 341 43.43 2rauA 354 43.82 1jf0A 195 44.84 a.39.1.5 62926 1rktA 205 45.88 a.4.1.9,a.121.1.1 97623,97624 1dd5A 185 46.26 d.67.3.1 39564 3cjdA 198 49.99 1i0dA 332 52.10 c.1.9.3 61487 2e3bA 344 55.35 a.93.1.1 132024 1zcbA 362 55.66 a.66.1.1,c.37.1.8 124901,124902 1bf6A 291 56.86 c.1.9.3 29065 2qtzA 539 57.80 1is1A 185 58.25 d.67.3.1 83704 2fq4A 192 58.88 a.4.1.9,a.121.1.1 133937,133938 3bcgA 215 59.00 1eywA 331 60.29 c.1.9.3 29057 1i58A 189 60.37 d.122.1.3 61773 1qrjB 199 60.66 a.28.3.1 16952 2yy8A 201 61.32 1dbqA 289 62.30 c.93.1.1 35666 3craA 265 62.61 1zkgA 212 63.07 a.4.1.9,a.121.1.1 125194,125195 2hrzA 342 64.04 1z7bA 358 64.63 c.2.1.2 124599 1pfvA 551 65.92 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1kb9A 431 67.17 d.185.1.1,d.185.1.1 77311,77312 1bavA 309 67.40 c.56.5.1 33806 1t56A 216 68.27 a.4.1.9,a.121.1.1 106428,106429 3cjsB 72 68.32 1oneA 436 68.99 c.1.11.1,d.54.1.1 29200,38844 2pzmA 330 71.12 1gm7A 209 71.12 d.153.1.2 65302 2hytA 197 75.22 2jesA 503 76.35 1b16A 254 78.30 c.2.1.2 29875 1dd9A 338 79.32 e.13.1.1 43254 1o4tA 133 79.51 b.82.1.9 86622 2bs3A 656 80.00 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1njgA 250 82.23 c.37.1.20 85785 1el4A 195 83.14 a.39.1.5 59453 1audA 101 83.39 d.58.7.1 39156 1u1jA 765 85.09 c.1.22.2,c.1.22.2 107590,107591 1u6bA 98 85.97 d.58.7.1 107703 2iw0A 254 86.56 c.6.2.3 137737 1jt6A 188 86.64 a.4.1.9,a.121.1.1 67247,67248 1urnA 97 86.67 d.58.7.1 39153 2i49A 429 88.63 2ew2A 316 88.91 2ctc 307 89.57