# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 2.25e-63 2iagA 482 4.96e-63 1tqnA 486 5.57e-63 a.104.1.1 107238 3b6hA 498 8.16e-63 3c6gA 479 1.94e-62 2ve3A 444 2.29e-62 1po5A 476 2.67e-62 a.104.1.1 94963 1nr6A 473 3.04e-62 a.104.1.1 92085 2hi4A 495 4.30e-62 1zo4A 473 1.28e-61 1r9oA 477 1.69e-61 a.104.1.1 104878 1dt6A 473 2.45e-61 a.104.1.1 18977 1ea1A 455 3.29e-61 a.104.1.1 18970 2ij2A 470 3.33e-61 a.104.1.1 137449 1bu7A 455 4.88e-61 a.104.1.1 18937 3b98A 475 5.43e-61 1jmeA 455 2.55e-60 a.104.1.1 66885 1h5zA 455 3.40e-60 a.104.1.1 90622 1x8vA 455 3.46e-60 a.104.1.1 114968 1u13A 455 5.46e-60 a.104.1.1 107578 1jpzA 473 6.26e-60 a.104.1.1 67069 2cibA 455 1.13e-57 1cptA 428 1.89e-54 a.104.1.1 18968 1cpt 412 3.23e-53 1izoA 417 3.94e-53 a.104.1.1 83851 1qmqA 414 1.41e-52 a.104.1.1 18907 1dz4A 414 1.47e-52 a.104.1.1 18903 1phd 414 2.22e-52 2zbxA 412 5.56e-52 2d0eA 407 1.25e-51 3bujA 397 1.45e-51 2d09A 407 1.67e-51 1cmnA 402 9.74e-51 a.104.1.1 18958 1rom 403 1.93e-50 1n97A 389 2.21e-50 a.104.1.1 80335 1jfbA 404 3.65e-50 a.104.1.1 66624 2z3tA 425 5.22e-50 1jipA 403 5.26e-50 a.104.1.1 66748 1f24A 402 9.38e-50 a.104.1.1 18953 1gwiA 411 1.34e-49 a.104.1.1 76364 1z8oA 404 1.57e-49 a.104.1.1 124722 1eupA 403 2.35e-49 a.104.1.1 18967 1q5dA 419 2.88e-48 a.104.1.1 95891 1yrcA 414 3.57e-48 a.104.1.1 123917 1s1fA 406 7.80e-48 a.104.1.1 112008 1odoA 408 4.66e-47 a.104.1.1 92783 3bdzA 397 1.54e-46 1lfkA 398 2.58e-46 a.104.1.1 77926 1n40A 396 3.08e-46 a.104.1.1 79977 1uedA 406 1.43e-45 a.104.1.1 99256 2rfbA 343 1.61e-45 2uuqA 414 1.62e-45 1t2bA 397 6.74e-45 1f4tA 368 4.67e-44 a.104.1.1 18973 1io7A 368 8.59e-44 a.104.1.1 18971 2fr7A 412 1.14e-40 1pjrA 724 11.39 c.37.1.19,c.37.1.19 32391,32392 1vr6A 350 13.45 c.1.10.4 120439 1h3nA 878 14.91 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 3b81A 203 14.95 2bnxA 386 15.86 a.118.1.23 128861 2bs2A 660 18.27 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 2of7A 260 18.75 2scpA 174 21.84 a.39.1.5 17256 1jqnA 883 22.05 c.1.12.3 77159 1al3A 324 22.45 c.94.1.1 35835 2v0cA 878 22.48 2gy9D 204 24.30 2pt0A 340 24.56 2ciwA 299 25.03 a.39.3.1,a.39.3.1 130502,130503 2i7xA 717 27.81 2f51A 118 29.54 1dklA 410 30.17 c.60.1.2 33996 2pbxA 203 31.69 1ha1 184 32.88 2yx0A 342 32.99 1l3kA 196 33.51 d.58.7.1,d.58.7.1 73539,73540 2yy8A 201 34.67 1pfvA 551 35.49 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2adbA 148 36.15 d.58.7.1 126581 2rldA 121 37.92 2c1lA 358 40.11 2etvA 346 40.96 c.92.2.4 132372 1cx0A 95 45.55 d.58.7.1 39158 1su0B 159 46.54 d.224.1.2 106015 1wexA 104 47.25 d.58.7.1 114568 1z8sA 146 49.91 2ggtA 164 50.06 c.47.1.10 135156 2bs3A 656 51.29 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2fy6A 143 51.29 c.47.1.10 134344 1txuA 273 51.42 a.222.1.1 107439 1u6bA 98 51.47 d.58.7.1 107703 1f0kA 364 53.16 c.87.1.2 35465 1a6i 217 53.55 3bcgA 215 54.61 1urnA 97 58.51 d.58.7.1 39153 2uxuA 210 58.78 2h30A 164 59.31 1qguB 519 59.68 c.92.2.3 35626 2fncA 381 59.73 1j1nA 492 60.07 c.94.1.1 83978 1u7kA 131 60.33 a.73.1.1 113087 1us7B 265 60.76 a.205.1.1 99858 1dd9A 338 61.56 e.13.1.1 43254 3cjdA 198 61.65 1g66A 207 62.59 c.69.1.30 31329 1audA 101 63.61 d.58.7.1 39156 2fgeA 995 63.62 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1spvA 184 65.23 c.50.1.2 98957 2ct8A 497 65.28 2a5hA 416 66.79 1i58A 189 68.29 d.122.1.3 61773 1yspA 181 68.29 1m5oC 100 68.83 d.58.7.1 78654 1w7jB 151 69.02 a.39.1.5 120690 2i10A 202 70.35 a.4.1.9,a.121.1.1 136960,136961 2awgA 118 71.36 2is6A 680 71.51 1yc9A 442 72.58 1qu2A 917 73.57 a.27.1.1,b.51.1.1,c.26.1.1 16925,26890,31592 1u1jA 765 74.14 c.1.22.2,c.1.22.2 107590,107591 2j7nA 1022 74.43 1omrA 201 74.74 a.39.1.5 93349 1oiaA 95 76.56 d.58.7.1 87051 1nu4A 97 76.94 d.58.7.1 80731 2o7oA 207 82.00 a.4.1.9,a.121.1.1 138930,138931 2bo9A 308 84.54 c.56.5.1 128897 1qqtA 551 86.12 a.27.1.1,c.26.1.1,g.41.1.1 16923,31590,45175 2iutA 574 89.32 1uhvA 500 89.65 b.71.1.2,c.1.8.3 99402,99403