# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 4.71e-48 1nr6A 473 1.85e-47 a.104.1.1 92085 3c6gA 479 6.45e-47 1zo4A 473 1.29e-46 1r9oA 477 1.60e-46 a.104.1.1 104878 2hi4A 495 1.98e-46 1dt6A 473 4.79e-46 a.104.1.1 18977 1bu7A 455 5.31e-46 a.104.1.1 18937 1jpzA 473 7.34e-46 a.104.1.1 67069 2ij2A 470 1.67e-45 a.104.1.1 137449 1po5A 476 2.38e-45 a.104.1.1 94963 1tqnA 486 6.02e-45 a.104.1.1 107238 2ve3A 444 7.15e-45 3b6hA 498 8.53e-45 1jmeA 455 8.66e-45 a.104.1.1 66885 2iagA 482 2.09e-44 1ea1A 455 2.91e-44 a.104.1.1 18970 3b98A 475 4.37e-44 1x8vA 455 4.62e-44 a.104.1.1 114968 1u13A 455 1.27e-43 a.104.1.1 107578 1h5zA 455 2.06e-43 a.104.1.1 90622 2cibA 455 1.65e-42 1izoA 417 1.28e-38 a.104.1.1 83851 2zbxA 412 2.47e-36 1qmqA 414 3.30e-36 a.104.1.1 18907 1z8oA 404 3.51e-36 a.104.1.1 124722 1jipA 403 3.62e-36 a.104.1.1 66748 1cptA 428 5.00e-36 a.104.1.1 18968 1cpt 412 5.05e-36 1eupA 403 1.76e-35 a.104.1.1 18967 1dz4A 414 2.00e-35 a.104.1.1 18903 1phd 414 2.08e-35 1f24A 402 6.56e-35 a.104.1.1 18953 1odoA 408 1.13e-34 a.104.1.1 92783 3bujA 397 1.33e-34 1jfbA 404 1.56e-34 a.104.1.1 66624 1cmnA 402 1.73e-34 a.104.1.1 18958 1n97A 389 2.27e-34 a.104.1.1 80335 1gwiA 411 3.00e-34 a.104.1.1 76364 1yrcA 414 7.34e-34 a.104.1.1 123917 2d09A 407 8.70e-34 1rom 403 9.61e-34 3bdzA 397 1.05e-33 1t2bA 397 1.20e-33 1q5dA 419 2.06e-33 a.104.1.1 95891 2d0eA 407 3.23e-33 2z3tA 425 5.96e-33 1s1fA 406 1.21e-32 a.104.1.1 112008 1n40A 396 6.47e-31 a.104.1.1 79977 1lfkA 398 9.24e-31 a.104.1.1 77926 2uuqA 414 6.04e-30 2rfbA 343 9.28e-30 1io7A 368 1.10e-29 a.104.1.1 18971 1f4tA 368 1.50e-28 a.104.1.1 18973 1uedA 406 2.16e-28 a.104.1.1 99256 2fr7A 412 2.21e-27 2h21A 440 2.536 a.166.1.1,b.85.7.3 135976,135977 1ywfA 296 2.644 c.45.1.5 124144 1rwhA 757 3.942 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1cydA 244 5.648 c.2.1.2 29825 1q7gA 359 6.643 c.2.1.3,d.81.1.2 96038,96039 1mo9A 523 6.854 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2iyaA 424 9.705 2gh9A 386 11.04 1qqtA 551 11.04 a.27.1.1,c.26.1.1,g.41.1.1 16923,31590,45175 1lwjA 441 11.67 b.71.1.1,c.1.8.1 74303,74304 1pujA 282 13.57 c.37.1.8 88294 3bixA 574 13.99 1hr6A 475 14.32 d.185.1.1,d.185.1.1 61164,61165 1vflA 356 14.86 c.1.9.1 120041 2f2hA 773 15.82 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 2c1vA 338 15.92 2q02A 272 17.39 1csjA 531 20.68 e.8.1.4 43120 1o5zA 442 21.25 c.59.1.2,c.72.2.2 92530,92531 2cycA 375 22.74 2agtA 319 23.19 2hmcA 344 23.44 1dklA 410 23.70 c.60.1.2 33996 1p0iA 529 23.78 c.69.1.1 93867 1lvaA 258 24.39 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1qg6A 261 25.24 c.2.1.2 29919 1c14A 262 25.48 c.2.1.2 29927 1topA 162 25.52 a.39.1.5 17223 1qe3A 489 25.57 c.69.1.1 34630 1vd6A 224 26.52 c.1.18.3 119991 2o2cA 613 27.68 1r7aA 504 28.26 b.71.1.1,c.1.8.1 97192,97193 1jubA 311 28.26 c.1.4.1 90908 2vjxA 846 28.48 1din 236 28.61 1ncx 162 28.73 1dd9A 338 28.80 e.13.1.1 43254 1frb 315 28.82 1uluA 261 29.66 c.2.1.2 113292 2pgfA 371 29.92 1xsjA 778 30.76 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2qmcA 377 31.30 1ukcA 522 31.58 c.69.1.17 107911 1ggvA 232 32.38 c.69.1.9 34683 1gesA 450 32.45 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1fnnA 389 33.26 a.4.5.11,c.37.1.20 16129,32426 2zdrA 349 35.92 2cybA 323 35.95 1k7yA 577 38.18 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1us0A 316 39.84 c.1.7.1 99850 1cqwA 295 39.96 c.69.1.8 34679 2b4gA 317 40.17 c.1.4.1 127829 1zk7A 467 40.59 2fv2A 268 41.25 2a4aA 281 41.27 c.1.10.1 126150 1xk7A 408 41.31 c.123.1.1 122071 2abqA 306 41.75 c.72.1.1 126528 1ituA 369 41.78 c.1.9.7 71423 2sqcA 631 44.32 a.102.4.2,a.102.4.2 18854,18855 1njrA 284 44.44 c.50.1.2 103858 2je8A 848 45.02 2vr4A 846 45.23 1ea9C 583 45.80 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2cyaA 364 45.84 1n3lA 372 46.17 c.26.1.1 79966 1wn1A 356 46.67 2rgmA 481 47.40 1tr1A 447 48.12 c.1.8.4 28957 2dorA 311 48.18 c.1.4.1 28593 1xuuA 349 48.19 b.85.1.1,c.1.10.6 116067,116068 1rqbA 539 48.40 a.5.7.2,c.1.10.5 105057,105058 4tmkA 213 48.57 c.37.1.1 31930 1bn6A 294 49.65 c.69.1.8 34678 1qwoA 442 50.41 c.60.1.2 104620 1oaaA 259 50.73 c.2.1.2 29829 2ag5A 246 51.96 c.2.1.2 126719 2oo6A 409 52.46 1fkx 349 53.13 1ebuA 358 53.26 c.2.1.3,d.81.1.2 30035,39950 1qsgA 265 53.26 c.2.1.2 29935 1y42X 392 53.44 1x1eA 239 53.63 2bceA 585 54.42 c.69.1.1 34625 1i6pA 220 54.54 c.53.2.1 61848 1knwA 425 55.16 b.49.2.3,c.1.6.1 90969,90970 1mh3A 421 55.78 a.4.1.1,c.94.1.1 79112,79113 2v6oA 596 55.85 1f4lA 551 56.29 a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 2pmlX 348 56.59 1o7fA 469 56.72 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1a4mA 349 56.88 c.1.9.1 29014 2ccjA 205 57.69 2gduA 504 57.79 b.71.1.1,c.1.8.1 135032,135033 1aogA 485 58.33 c.3.1.5,c.3.1.5,d.87.1.1 30517,30518,40190 1jk0A 419 60.07 a.25.1.2 63142 2e3zA 465 60.59 2ejwA 332 60.74 1j0mA 752 60.85 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1pfvA 551 60.97 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2a2aA 321 61.00 1sxjA 511 61.09 a.80.1.1,c.37.1.20 106081,106082 1woyA 500 63.05 a.27.1.1,c.26.1.1 121130,121131 1fpqA 372 63.28 a.4.5.29,c.66.1.12 59947,59948 1sxjC 340 63.33 a.80.1.1,c.37.1.20 106085,106086 2qp2A 511 63.74 1eqnA 321 63.92 e.13.1.1 43256 1lv7A 257 63.97 c.37.1.20 78232 1iqcA 308 65.14 a.3.1.5,a.3.1.5 66266,66267 1abwA 283 65.28 a.1.1.2,a.1.1.2 15288,15289 1t4hA 290 65.38 d.144.1.7 106420 1wcgA 464 65.46 c.1.8.4 120888 1wx1A 335 65.47 2h7cA 542 65.93 c.69.1.1 136207 1zuaX 317 66.71 1enp 312 67.03 1gvfA 286 67.79 c.1.10.2 70599 1j33A 335 67.80 c.39.1.1 77069 2ekpA 239 67.90 2gh1A 301 68.01 c.66.1.49 135170 1ggzA 148 68.90 a.39.1.5 70176 2nv2A 294 70.07 1fecA 490 70.19 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2cfuA 658 70.36 1ea5A 537 70.90 c.69.1.1 34592 1e70M 501 70.93 c.1.8.4 28926 1zaiA 363 72.41 c.1.10.1 124828 2jahA 247 72.51 1og6A 298 73.12 c.1.7.1 86984 1j1uA 306 73.34 c.26.1.1 83980 2obhA 143 73.35 1e4iA 447 73.83 c.1.8.4 59225 2i4iA 417 76.44 1ads 315 76.67 1vfgA 390 77.14 a.173.1.1,d.218.1.4 108570,108571 2nqoA 376 77.21 d.153.1.6 138473 1zi8A 236 77.23 1zmdA 474 77.35 2j07A 420 77.55 a.99.1.1,c.28.1.1 137891,137892 3bptA 363 77.59 1auoA 218 77.80 c.69.1.14 34716 2ao0A 324 78.71 2bs9A 503 79.04 b.71.1.2,c.1.8.3 129062,129063 1rd5A 262 80.60 c.1.2.4 111772 2b6cA 220 81.14 a.118.1.17 127983 2dtxA 264 81.87 1kl1A 419 83.06 c.67.1.4 72663 2grmA 317 83.10 1goxA 369 84.54 c.1.4.1 28607 1jf2A 195 85.61 a.39.1.5 62930 2h8oA 335 87.55 2qezA 455 87.77 1iuqA 367 88.43 c.112.1.1 90703 2dsjA 423 88.78