# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 8.13e-68 a.104.1.1 107238 2fdvA 476 2.97e-67 3c6gA 479 5.36e-67 1po5A 476 6.83e-67 a.104.1.1 94963 2hi4A 495 1.87e-66 1r9oA 477 2.73e-66 a.104.1.1 104878 1x8vA 455 3.67e-66 a.104.1.1 114968 3b6hA 498 1.24e-65 3b98A 475 1.35e-65 1h5zA 455 2.35e-65 a.104.1.1 90622 1jpzA 473 4.54e-65 a.104.1.1 67069 1zo4A 473 5.80e-65 2ve3A 444 6.38e-65 2cibA 455 1.63e-64 2iagA 482 8.97e-63 2ij2A 470 1.80e-62 a.104.1.1 137449 2zbxA 412 7.88e-56 1izoA 417 1.65e-55 a.104.1.1 83851 3bujA 397 8.95e-55 3bdzA 397 9.28e-55 1q5dA 419 1.60e-54 a.104.1.1 95891 1t2bA 397 3.25e-54 1jfbA 404 3.31e-54 a.104.1.1 66624 1z8oA 404 3.46e-54 a.104.1.1 124722 2fr7A 412 3.73e-54 1gwiA 411 4.31e-54 a.104.1.1 76364 1yrcA 414 6.92e-54 a.104.1.1 123917 1cptA 428 1.78e-53 a.104.1.1 18968 1cpt 412 1.89e-53 1uedA 406 6.11e-53 a.104.1.1 99256 1s1fA 406 8.66e-53 a.104.1.1 112008 1n40A 396 1.16e-52 a.104.1.1 79977 1n97A 389 1.45e-52 a.104.1.1 80335 2z3tA 425 2.86e-52 2uuqA 414 5.90e-52 1odoA 408 3.38e-51 a.104.1.1 92783 1lfkA 398 4.59e-49 a.104.1.1 77926 2rfbA 343 1.08e-48 1io7A 368 1.96e-46 a.104.1.1 18971 1nd6A 354 2.251 c.60.1.2 80407 2dvtA 327 2.692 c.1.9.15 131793 2pq6A 482 3.667 2hhcA 330 4.188 2q4uA 272 5.726 1cjcA 460 10.81 c.3.1.1,c.4.1.1 30319,30604 2q83A 346 10.91 1rrvA 416 11.24 c.87.1.5 105083 1umpA 631 11.53 a.102.4.2,a.102.4.2 99619,99620 2nooA 502 13.05 1h7eA 245 16.27 c.68.1.13 60717 2nsaA 170 17.98 1vr5A 547 19.40 c.94.1.1 120437 2scpA 174 20.16 a.39.1.5 17256 1tn6B 437 21.31 a.102.4.3 112528 2jg2A 422 22.78 2basA 431 22.96 c.1.33.1,d.110.6.2 128244,128245 1qqfA 277 25.18 a.102.4.4 18875 1ep3A 311 31.31 c.1.4.1 28597 2hpkA 208 31.80 2go9A 161 32.19 1dqaA 467 32.67 d.58.20.1,d.179.1.1 39364,42585 2nq5A 755 33.47 2sqcA 631 33.66 a.102.4.2,a.102.4.2 18854,18855 3bv0A 437 34.25 2f9dA 125 35.92 d.58.7.1 133159 2p36A 335 36.29 1uhkA 191 37.64 a.39.1.5 119681 2i8aA 252 38.78 2di4A 238 41.11 a.269.1.1 131522 1w6kA 732 41.37 a.102.4.2,a.102.4.2 114271,114272 1dceB 331 42.79 a.102.4.3 18872 2qahA 303 43.07 1a9nB 96 43.22 d.58.7.1 39165 2qt1A 207 43.30 1qz9A 416 45.94 c.67.1.3 96621 1z7aA 308 46.17 c.6.2.6 124591 1kwgA 645 46.53 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ee4A 423 48.66 a.118.1.1 19128 2pv7A 298 48.80 2qzvA 873 49.56 1cznA 169 49.78 c.23.5.1 31181 2b61A 377 50.10 1jtvA 327 50.19 c.2.1.2 84230 1w7jB 151 50.48 a.39.1.5 120690 1i5nA 146 50.65 a.24.10.3 61805 2b4uA 335 51.89 1yzxA 226 52.91 2iyfA 430 53.34 2ffiA 288 54.36 c.1.9.15 133385 2rghA 571 56.01 2o7rA 338 56.63 3cbuA 214 56.70 1is1A 185 56.87 d.67.3.1 83704 2qk2A 242 57.00 2r4vA 247 57.29 1t5jA 313 57.83 a.209.1.1 99125 1ezwA 349 58.53 c.1.16.3 29558 2nx9A 464 58.77 2ggoA 401 58.94 2iw1A 374 60.81 c.87.1.8 137738 1khvA 516 61.58 e.8.1.4 68627 1qwjA 229 61.59 c.68.1.13 96478 2prrA 197 61.77 1gp6A 356 61.91 b.82.2.1 65441 1w77A 228 62.51 c.68.1.13 120679 1t0fA 276 62.97 a.4.5.27,c.52.1.16 112195,112196 1k0mA 241 62.98 a.45.1.1,c.47.1.5 67949,67950 1sxjC 340 64.51 a.80.1.1,c.37.1.20 106085,106086 2e8yA 718 64.98 2o7iA 592 65.53 1wy2A 351 66.26 1yb5A 351 66.52 b.35.1.2,c.2.1.1 116601,116602 2e5iA 124 67.41 2hpsA 186 68.04 1zlqA 502 69.63 c.94.1.1 125253 2b9wA 424 71.12 3ce9A 354 71.47 3caxA 369 72.08 1xu9A 286 72.62 c.2.1.2 116052 1vlpA 441 74.15 d.41.2.2,c.1.17.2 108840,108841 1r5lA 262 74.45 a.5.3.1,c.13.1.1 97099,97100 2nwfA 141 75.99 3bjdA 332 76.05 2fr1A 486 76.55 c.2.1.2,c.2.1.2 133961,133962 2i76A 276 78.01 2ot3A 274 81.17 a.222.1.1 139311 1xngA 268 82.27 c.26.2.1 122186 1wn1A 356 82.36 2c1xA 456 82.65 1jf9A 408 83.03 c.67.1.3 62931 2oyoA 196 83.80 1kwmA 402 84.95 c.56.5.1,d.58.3.1 73079,73080 1wa5B 530 85.88 a.118.1.1 114432 2i10A 202 86.45 a.4.1.9,a.121.1.1 136960,136961 1wqgA 185 86.89 2efeA 267 87.76 2qh5A 308 89.56