# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 1.31e-65 a.104.1.1 107238 2fdvA 476 1.82e-65 3c6gA 479 2.34e-65 1po5A 476 4.50e-65 a.104.1.1 94963 2hi4A 495 7.34e-65 1r9oA 477 1.84e-64 a.104.1.1 104878 1x8vA 455 3.16e-64 a.104.1.1 114968 3b6hA 498 1.17e-63 1h5zA 455 2.27e-63 a.104.1.1 90622 3b98A 475 3.38e-63 1jpzA 473 3.69e-63 a.104.1.1 67069 1zo4A 473 5.28e-63 2ve3A 444 5.64e-63 2cibA 455 7.04e-63 2iagA 482 7.30e-61 2ij2A 470 1.37e-60 a.104.1.1 137449 2zbxA 412 1.41e-54 1izoA 417 4.29e-54 a.104.1.1 83851 3bdzA 397 1.92e-53 1z8oA 404 7.01e-53 a.104.1.1 124722 1t2bA 397 7.14e-53 1q5dA 419 7.62e-53 a.104.1.1 95891 3bujA 397 1.02e-52 1jfbA 404 1.06e-52 a.104.1.1 66624 1gwiA 411 1.12e-52 a.104.1.1 76364 1yrcA 414 1.80e-52 a.104.1.1 123917 2fr7A 412 2.72e-52 1cptA 428 3.94e-52 a.104.1.1 18968 1cpt 412 5.48e-52 1n40A 396 1.78e-51 a.104.1.1 79977 1uedA 406 2.18e-51 a.104.1.1 99256 1s1fA 406 4.40e-51 a.104.1.1 112008 2uuqA 414 5.57e-51 2z3tA 425 8.19e-51 1n97A 389 9.53e-51 a.104.1.1 80335 1odoA 408 1.09e-49 a.104.1.1 92783 2rfbA 343 3.12e-47 1lfkA 398 3.85e-47 a.104.1.1 77926 1io7A 368 8.11e-46 a.104.1.1 18971 1nd6A 354 2.287 c.60.1.2 80407 2hhcA 330 2.841 2dvtA 327 2.877 c.1.9.15 131793 2pq6A 482 3.141 2q83A 346 9.116 1rrvA 416 10.23 c.87.1.5 105083 2nx9A 464 11.33 1w6kA 732 13.21 a.102.4.2,a.102.4.2 114271,114272 2f9dA 125 13.98 d.58.7.1 133159 1h7eA 245 14.08 c.68.1.13 60717 1cjcA 460 14.17 c.3.1.1,c.4.1.1 30319,30604 1umpA 631 14.78 a.102.4.2,a.102.4.2 99619,99620 2scpA 174 15.00 a.39.1.5 17256 2b61A 377 16.49 2q4uA 272 18.40 1tn6B 437 18.89 a.102.4.3 112528 2e5iA 124 19.07 2nooA 502 21.13 1qqfA 277 21.46 a.102.4.4 18875 1uhkA 191 22.12 a.39.1.5 119681 2qt1A 207 22.52 2e8yA 718 23.02 2fp3A 316 26.44 1a9nB 96 27.70 d.58.7.1 39165 2b9wA 424 29.84 1vr5A 547 31.70 c.94.1.1 120437 1sxjC 340 31.76 a.80.1.1,c.37.1.20 106085,106086 2qahA 303 32.41 1dceB 331 32.41 a.102.4.3 18872 1pjrA 724 32.48 c.37.1.19,c.37.1.19 32391,32392 2go9A 161 33.70 2qh5A 308 34.04 1uqwA 509 37.11 c.94.1.1 99799 1cznA 169 38.09 c.23.5.1 31181 2prrA 197 38.75 2b4uA 335 39.11 1t5jA 313 40.17 a.209.1.1 99125 3bv0A 437 43.00 1w7jB 151 43.02 a.39.1.5 120690 2ie7A 318 44.01 a.65.1.1 137293 2rghA 571 46.22 2o7iA 592 47.28 1qwjA 229 47.74 c.68.1.13 96478 2gicA 422 48.74 a.260.1.1 135227 2sqcA 631 49.70 a.102.4.2,a.102.4.2 18854,18855 1z5hA 780 49.73 2di4A 238 50.83 a.269.1.1 131522 1dqaA 467 51.07 d.58.20.1,d.179.1.1 39364,42585 1vicA 262 51.30 c.68.1.13 100756 1xu9A 286 51.85 c.2.1.2 116052 2dhxA 104 52.30 1ee4A 423 52.79 a.118.1.1 19128 2efeA 267 52.86 2r4vA 247 53.81 1kwgA 645 53.81 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1nstA 325 53.96 c.37.1.5 31951 2hpkA 208 54.62 2ditA 112 55.24 d.58.7.1 131533 1i5nA 146 56.35 a.24.10.3 61805 2nsaA 170 56.66 2jg2A 422 56.77 2db0A 253 57.32 2hpsA 186 57.35 2nwfA 141 57.36 2iyfA 430 57.48 1is1A 185 57.63 d.67.3.1 83704 3pmgA 561 59.36 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1jtvA 327 62.48 c.2.1.2 84230 2p36A 335 63.47 1ep3A 311 64.35 c.1.4.1 28597 2basA 431 64.53 c.1.33.1,d.110.6.2 128244,128245 2i10A 202 65.54 a.4.1.9,a.121.1.1 136960,136961 2qzvA 873 66.69 1xo1A 291 68.90 a.60.7.1,c.120.1.2 18086,33356 1z7aA 308 69.48 c.6.2.6 124591 1v0jA 399 70.17 1ezwA 349 70.67 c.1.16.3 29558 2ggoA 401 70.76 1wqgA 185 72.83 1zjaA 557 73.05 2fr1A 486 74.27 c.2.1.2,c.2.1.2 133961,133962 1nu4A 97 75.43 d.58.7.1 80731 2r44A 331 79.09 2ffiA 288 80.82 c.1.9.15 133385 3ce9A 354 81.97 1yzxA 226 82.56 1r5lA 262 82.61 a.5.3.1,c.13.1.1 97099,97100 1l3kA 196 86.57 d.58.7.1,d.58.7.1 73539,73540 1wa5B 530 87.24 a.118.1.1 114432 2f7tA 227 87.92 1lrvA 244 89.14 a.118.1.5 19146 3bgvA 313 89.30