# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3c6gA 479 1.90e-66 2fdvA 476 4.23e-66 1tqnA 486 4.40e-66 a.104.1.1 107238 1po5A 476 5.73e-66 a.104.1.1 94963 2hi4A 495 6.74e-66 3b6hA 498 2.66e-65 1r9oA 477 3.73e-65 a.104.1.1 104878 3b98A 475 8.89e-65 1x8vA 455 2.05e-64 a.104.1.1 114968 1zo4A 473 3.45e-64 2ve3A 444 3.52e-64 1jpzA 473 7.85e-64 a.104.1.1 67069 1h5zA 455 1.05e-63 a.104.1.1 90622 2iagA 482 3.02e-63 2cibA 455 6.40e-63 2ij2A 470 8.70e-62 a.104.1.1 137449 2zbxA 412 1.24e-54 1izoA 417 2.47e-54 a.104.1.1 83851 3bdzA 397 1.89e-53 1yrcA 414 2.18e-53 a.104.1.1 123917 1t2bA 397 4.23e-53 1gwiA 411 4.63e-53 a.104.1.1 76364 3bujA 397 6.08e-53 1jfbA 404 1.06e-52 a.104.1.1 66624 2fr7A 412 1.15e-52 1q5dA 419 1.19e-52 a.104.1.1 95891 1z8oA 404 1.32e-52 a.104.1.1 124722 1uedA 406 2.46e-52 a.104.1.1 99256 1cpt 412 3.61e-52 1cptA 428 4.23e-52 a.104.1.1 18968 1n97A 389 1.07e-51 a.104.1.1 80335 1s1fA 406 1.44e-51 a.104.1.1 112008 1n40A 396 5.02e-51 a.104.1.1 79977 2z3tA 425 6.53e-51 2uuqA 414 9.29e-51 1odoA 408 6.06e-50 a.104.1.1 92783 1lfkA 398 2.61e-48 a.104.1.1 77926 2rfbA 343 1.40e-47 1io7A 368 3.15e-45 a.104.1.1 18971 2pq6A 482 1.386 1nd6A 354 3.293 c.60.1.2 80407 1rrvA 416 3.588 c.87.1.5 105083 2hhcA 330 4.139 2dvtA 327 10.24 c.1.9.15 131793 1wy2A 351 12.44 1pjrA 724 13.58 c.37.1.19,c.37.1.19 32391,32392 1w6kA 732 14.48 a.102.4.2,a.102.4.2 114271,114272 2hpkA 208 16.18 1jtvA 327 18.43 c.2.1.2 84230 2f9dA 125 19.50 d.58.7.1 133159 1t5jA 313 19.72 a.209.1.1 99125 1umpA 631 21.84 a.102.4.2,a.102.4.2 99619,99620 2nx9A 464 23.05 2b61A 377 23.40 2akzA 439 25.37 c.1.11.1,d.54.1.1 126944,126945 1uhkA 191 26.44 a.39.1.5 119681 1i2cA 404 28.41 c.2.1.2 83666 1tn6B 437 29.60 a.102.4.3 112528 2al1A 436 30.07 c.1.11.1,d.54.1.1 126949,126950 2qt1A 207 30.13 2di4A 238 30.46 a.269.1.1 131522 1x6vA 630 30.67 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1wdpA 495 34.40 c.1.8.1 120907 1r5lA 262 35.36 a.5.3.1,c.13.1.1 97099,97100 1khvA 516 35.84 e.8.1.4 68627 1wkyA 464 36.22 b.18.1.31,c.1.8.3 120992,120993 2ovkC 159 37.43 1wn1A 356 38.01 1a9nB 96 39.12 d.58.7.1 39165 1uc8A 280 40.58 c.30.1.6,d.142.1.7 99165,99166 2ie7A 318 41.39 a.65.1.1 137293 2jg2A 422 41.91 1oneA 436 42.20 c.1.11.1,d.54.1.1 29200,38844 2c1xA 456 42.32 2o7iA 592 42.87 2q4uA 272 42.87 2qahA 303 43.15 2q83A 346 43.35 2ffiA 288 43.74 c.1.9.15 133385 2nooA 502 44.03 2r4vA 247 44.96 1h7eA 245 45.55 c.68.1.13 60717 2oyoA 196 46.80 1th0A 226 46.83 d.3.1.7 106903 1l9xA 315 47.03 c.23.16.1 73762 2bwvA 440 47.13 c.55.2.1,d.127.1.1 129387,129388 1w7jB 151 48.17 a.39.1.5 120690 2scpA 174 49.07 a.39.1.5 17256 2sqcA 631 49.66 a.102.4.2,a.102.4.2 18854,18855 2fr1A 486 50.11 c.2.1.2,c.2.1.2 133961,133962 1yb5A 351 51.20 b.35.1.2,c.2.1.1 116601,116602 1w3wA 327 51.45 1cznA 169 52.81 c.23.5.1 31181 1kwgA 645 54.19 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1j6oA 268 54.64 c.1.9.12 77088 2fnuA 375 55.51 c.67.1.4 133831 2qh5A 308 56.27 2nsaA 170 56.62 1uqwA 509 57.74 c.94.1.1 99799 1fxoA 293 58.71 c.68.1.6 34524 1hzfA 367 58.73 a.102.4.4 76731 1h5rA 293 60.02 c.68.1.6 65623 2ixaA 444 60.43 1smdA 496 60.75 b.71.1.1,c.1.8.1 27768,28755 2pfxA 191 60.91 1wdcB 156 60.95 a.39.1.5 17302 2is6A 680 62.29 1h6dA 433 65.48 c.2.1.3,d.81.1.5 65656,65657 1epuA 591 65.87 e.25.1.1 43358 1i1qA 520 66.28 d.161.1.1 61543 1lucA 355 66.79 c.1.16.1 29547 1i5nA 146 68.50 a.24.10.3 61805 2q01A 497 68.82 3cbuA 214 69.00 1qwjA 229 71.12 c.68.1.13 96478 1is1A 185 71.13 d.67.3.1 83704 2ptzA 432 73.15 2ez9A 603 73.74 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2f7tA 227 74.06 1mdoA 393 75.02 c.67.1.4 79013 2i7gA 376 75.06 2prrA 197 75.98 3bv0A 437 77.02 1nu4A 97 78.01 d.58.7.1 80731 1aua 296 78.11 2al2A 436 79.04 c.1.11.1,d.54.1.1 126953,126954 1ezwA 349 80.52 c.1.16.3 29558 1dpeA 507 80.90 c.94.1.1 35799 1r26A 125 81.58 c.47.1.1 96847 1ep3A 311 81.71 c.1.4.1 28597 2ckwA 515 83.18 1iz0A 302 84.43 b.35.1.2,c.2.1.1 83821,83822 1wq3A 322 85.00 1k0mA 241 85.21 a.45.1.1,c.47.1.5 67949,67950 1l3kA 196 86.04 d.58.7.1,d.58.7.1 73539,73540 2ot3A 274 86.12 a.222.1.1 139311 2ghpA 292 86.97 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1b85A 351 88.51 a.93.1.1 18581 2dpyA 438 89.21