# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tqnA	486	9.00e-69	a.104.1.1	107238
1po5A	476	1.55e-68	a.104.1.1	94963
2fdvA	476	1.61e-68		
3c6gA	479	7.93e-68		
2hi4A	495	1.02e-67		
1r9oA	477	1.41e-67	a.104.1.1	104878
3b6hA	498	7.19e-67		
1x8vA	455	1.10e-66	a.104.1.1	114968
1h5zA	455	2.64e-66	a.104.1.1	90622
3b98A	475	3.13e-66		
1jpzA	473	3.78e-66	a.104.1.1	67069
1zo4A	473	4.38e-66		
2ve3A	444	7.07e-66		
2cibA	455	9.75e-66		
2iagA	482	9.35e-65		
2ij2A	470	1.24e-63	a.104.1.1	137449
2zbxA	412	2.80e-57		
1izoA	417	2.71e-56	a.104.1.1	83851
3bdzA	397	1.65e-55		
3bujA	397	3.05e-55		
1z8oA	404	3.94e-55	a.104.1.1	124722
1t2bA	397	6.58e-55		
1gwiA	411	6.60e-55	a.104.1.1	76364
1q5dA	419	9.39e-55	a.104.1.1	95891
1yrcA	414	9.62e-55	a.104.1.1	123917
1jfbA	404	1.66e-54	a.104.1.1	66624
2fr7A	412	2.14e-54		
1cpt	412	2.67e-54		
1uedA	406	3.37e-54	a.104.1.1	99256
1cptA	428	3.77e-54	a.104.1.1	18968
1n40A	396	2.75e-53	a.104.1.1	79977
1n97A	389	4.23e-53	a.104.1.1	80335
1s1fA	406	4.25e-53	a.104.1.1	112008
2uuqA	414	1.13e-52		
2z3tA	425	1.23e-52		
1odoA	408	1.43e-51	a.104.1.1	92783
1lfkA	398	3.65e-50	a.104.1.1	77926
2rfbA	343	5.02e-49		
1io7A	368	3.13e-46	a.104.1.1	18971
2q83A	346	1.426		
2dvtA	327	3.680	c.1.9.15	131793
2hhcA	330	5.655		
1qqfA	277	6.548	a.102.4.4	18875
2qahA	303	7.508		
2pq6A	482	9.718		
2b61A	377	10.80		
1cjcA	460	12.42	c.3.1.1,c.4.1.1	30319,30604
2nooA	502	13.59		
1nd6A	354	14.61	c.60.1.2	80407
1dceB	331	15.36	a.102.4.3	18872
1qz9A	416	16.33	c.67.1.3	96621
1umpA	631	17.28	a.102.4.2,a.102.4.2	99619,99620
2sqcA	631	17.40	a.102.4.2,a.102.4.2	18854,18855
2jg2A	422	19.34		
2basA	431	19.67	c.1.33.1,d.110.6.2	128244,128245
3bv0A	437	20.08		
2ffiA	288	22.55	c.1.9.15	133385
1yb5A	351	25.57	b.35.1.2,c.2.1.1	116601,116602
2nsaA	170	26.31		
2q4uA	272	26.92		
2qk2A	242	27.43		
1cznA	169	27.46	c.23.5.1	31181
2id3A	225	29.06	a.4.1.9,a.121.1.1	137261,137262
1sxjC	340	30.05	a.80.1.1,c.37.1.20	106085,106086
2di4A	238	30.11	a.269.1.1	131522
2scpA	174	30.30	a.39.1.5	17256
2r44A	331	32.70		
2qzvA	873	32.94		
3c3kA	285	34.31		
1a9nB	96	37.11	d.58.7.1	39165
1vr5A	547	41.14	c.94.1.1	120437
3ccyA	203	41.59		
2ioyA	283	42.69		
1t0fA	276	44.01	a.4.5.27,c.52.1.16	112195,112196
1jftA	340	44.32	a.35.1.5,c.93.1.1	66652,66653
1jf9A	408	44.61	c.67.1.3	62931
1h7eA	245	46.17	c.68.1.13	60717
1hzfA	367	47.01	a.102.4.4	76731
2b4uA	335	49.91		
2ct9A	208	50.06		
1t5jA	313	50.44	a.209.1.1	99125
3bjdA	332	50.72		
1ee4A	423	51.41	a.118.1.1	19128
1jubA	311	52.61	c.1.4.1	90908
1w6kA	732	53.37	a.102.4.2,a.102.4.2	114271,114272
2nx9A	464	53.82		
2f9dA	125	54.96	d.58.7.1	133159
1sxjA	511	55.20	a.80.1.1,c.37.1.20	106081,106082
1gl6A	436	55.42	c.37.1.11	70259
2hpkA	208	55.70		
2zcmA	192	57.17		
1l9xA	315	59.64	c.23.16.1	73762
2qvcA	313	60.26		
2gwdA	449	60.83		
1tn6B	437	62.70	a.102.4.3	112528
1w3wA	327	62.74		
2ie7A	318	63.59	a.65.1.1	137293
1rzuA	485	63.74	c.87.1.8	105140
1wqgA	185	64.53		
2uxyA	341	64.86		
1is1A	185	66.00	d.67.3.1	83704
1ep3A	311	66.31	c.1.4.1	28597
2nwfA	141	67.58		
1ezwA	349	67.58	c.1.16.3	29558
1in4A	334	67.76	a.4.5.11,c.37.1.20	62597,62598
1kzyC	259	68.28	c.15.1.4,c.15.1.4	73383,73384
1yzxA	226	68.85		
2of7A	260	70.16		
2rghA	571	73.13		
3c61A	314	73.90		
2go9A	161	74.62		
2iw1A	374	75.98	c.87.1.8	137738
2qh5A	308	76.66		
1upvA	257	77.28	a.123.1.1	113398
1lf6A	684	77.69	a.102.1.5,b.30.5.5	77918,77919
1dpeA	507	78.12	c.94.1.1	35799
1w77A	228	78.51	c.68.1.13	120679
2r4vA	247	80.29		
1uhkA	191	80.67	a.39.1.5	119681
2fepA	289	81.53		
1e8yA	966	81.62	a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4	19152,23187,37635,41715
2qyvA	487	81.66		
2qt1A	207	81.82		
2himA	358	82.38		
2ccmA	191	83.44		
1a6i	217	83.85		
2fp3A	316	84.71		
1rrvA	416	85.05	c.87.1.5	105083
1eluA	390	85.19	c.67.1.3	34434
1sxjE	354	85.88	a.80.1.1,c.37.1.20	106089,106090
3brqA	296	87.48		
2hpsA	186	87.66		
1nu4A	97	87.88	d.58.7.1	80731
2d51A	406	89.83