# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 4.27e-69 a.104.1.1 107238 1po5A 476 6.14e-69 a.104.1.1 94963 2fdvA 476 6.19e-69 3c6gA 479 2.68e-68 2hi4A 495 4.44e-68 1r9oA 477 1.43e-67 a.104.1.1 104878 1x8vA 455 2.41e-67 a.104.1.1 114968 3b6hA 498 6.88e-67 1h5zA 455 7.61e-67 a.104.1.1 90622 1jpzA 473 1.17e-66 a.104.1.1 67069 1zo4A 473 1.40e-66 2ve3A 444 2.83e-66 3b98A 475 3.55e-66 2cibA 455 4.72e-66 2iagA 482 9.90e-65 2ij2A 470 4.56e-64 a.104.1.1 137449 2zbxA 412 1.83e-57 1izoA 417 8.57e-57 a.104.1.1 83851 3bujA 397 6.47e-56 3bdzA 397 6.84e-56 1z8oA 404 2.19e-55 a.104.1.1 124722 1yrcA 414 2.54e-55 a.104.1.1 123917 1gwiA 411 2.86e-55 a.104.1.1 76364 1q5dA 419 3.32e-55 a.104.1.1 95891 1t2bA 397 3.60e-55 1jfbA 404 6.00e-55 a.104.1.1 66624 2fr7A 412 7.47e-55 1cpt 412 1.72e-54 1uedA 406 2.14e-54 a.104.1.1 99256 1cptA 428 2.54e-54 a.104.1.1 18968 1n40A 396 1.56e-53 a.104.1.1 79977 1s1fA 406 1.69e-53 a.104.1.1 112008 1n97A 389 2.48e-53 a.104.1.1 80335 2uuqA 414 4.78e-53 2z3tA 425 5.15e-53 1odoA 408 1.03e-51 a.104.1.1 92783 1lfkA 398 2.32e-50 a.104.1.1 77926 2rfbA 343 1.21e-49 1io7A 368 8.87e-47 a.104.1.1 18971 2q83A 346 4.665 2dvtA 327 4.691 c.1.9.15 131793 2hhcA 330 5.583 2b61A 377 8.706 1qqfA 277 8.762 a.102.4.4 18875 1umpA 631 9.668 a.102.4.2,a.102.4.2 99619,99620 2qahA 303 11.21 3bv0A 437 11.32 1cjcA 460 11.68 c.3.1.1,c.4.1.1 30319,30604 1nd6A 354 14.08 c.60.1.2 80407 2sqcA 631 14.30 a.102.4.2,a.102.4.2 18854,18855 2nooA 502 16.16 2scpA 174 17.13 a.39.1.5 17256 2pq6A 482 17.58 2jg2A 422 18.18 1qz9A 416 19.60 c.67.1.3 96621 2basA 431 20.26 c.1.33.1,d.110.6.2 128244,128245 2qzvA 873 21.01 2q4uA 272 22.43 2nx9A 464 22.82 1dceB 331 23.26 a.102.4.3 18872 1yb5A 351 26.63 b.35.1.2,c.2.1.1 116601,116602 2r44A 331 27.71 1cznA 169 27.80 c.23.5.1 31181 2nsaA 170 29.06 2ffiA 288 33.03 c.1.9.15 133385 2id3A 225 33.38 a.4.1.9,a.121.1.1 137261,137262 2b4uA 335 36.48 1ee4A 423 37.40 a.118.1.1 19128 1jf9A 408 38.08 c.67.1.3 62931 1w6kA 732 38.16 a.102.4.2,a.102.4.2 114271,114272 2iw1A 374 38.25 c.87.1.8 137738 2of7A 260 40.25 1h7eA 245 40.38 c.68.1.13 60717 2qk2A 242 40.97 2qh5A 308 41.46 1sxjC 340 42.20 a.80.1.1,c.37.1.20 106085,106086 3c3kA 285 43.00 2di4A 238 43.43 a.269.1.1 131522 1gl6A 436 43.63 c.37.1.11 70259 2uxyA 341 44.27 2ct9A 208 44.41 1vr5A 547 45.30 c.94.1.1 120437 1a9nB 96 45.85 d.58.7.1 39165 3ccyA 203 46.15 2r4vA 247 46.84 1tn6B 437 48.30 a.102.4.3 112528 2zcmA 192 49.75 1t0fA 276 49.94 a.4.5.27,c.52.1.16 112195,112196 3bjdA 332 50.57 1w77A 228 51.30 c.68.1.13 120679 1jftA 340 52.06 a.35.1.5,c.93.1.1 66652,66653 1t5jA 313 52.51 a.209.1.1 99125 2d51A 406 52.76 1jubA 311 53.54 c.1.4.1 90908 1w3wA 327 55.12 2hpkA 208 55.13 1hzfA 367 56.18 a.102.4.4 76731 1ep3A 311 57.54 c.1.4.1 28597 1in4A 334 58.34 a.4.5.11,c.37.1.20 62597,62598 1dpeA 507 58.64 c.94.1.1 35799 2q3mA 326 64.58 c.37.1.5 139795 2q0xA 335 64.77 2go9A 161 65.11 1uhkA 191 66.96 a.39.1.5 119681 2hpsA 186 67.52 1z7aA 308 68.40 c.6.2.6 124591 2ie7A 318 68.60 a.65.1.1 137293 2ioyA 283 69.64 1oyzA 280 70.07 a.118.1.16 93775 1sxjA 511 70.55 a.80.1.1,c.37.1.20 106081,106082 3c61A 314 71.02 1sxjE 354 72.46 a.80.1.1,c.37.1.20 106089,106090 2ccmA 191 72.52 1rzuA 485 72.60 c.87.1.8 105140 2f9dA 125 74.95 d.58.7.1 133159 1lf6A 684 75.01 a.102.1.5,b.30.5.5 77918,77919 1is1A 185 75.15 d.67.3.1 83704 1rktA 205 77.02 a.4.1.9,a.121.1.1 97623,97624 2o7rA 338 78.17 1e8yA 966 78.50 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 3cbuA 214 78.58 2e2rA 244 79.81 1wqgA 185 82.75 2ogwA 310 83.81 2prrA 197 86.56 1a6i 217 89.92