# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 5.71e-67 a.104.1.1 107238 1po5A 476 6.49e-67 a.104.1.1 94963 2fdvA 476 6.60e-67 3c6gA 479 1.92e-66 2hi4A 495 2.49e-66 1r9oA 477 6.88e-66 a.104.1.1 104878 1x8vA 455 2.66e-65 a.104.1.1 114968 3b6hA 498 5.07e-65 1h5zA 455 8.90e-65 a.104.1.1 90622 1jpzA 473 1.11e-64 a.104.1.1 67069 1zo4A 473 1.11e-64 2ve3A 444 1.30e-64 3b98A 475 1.57e-64 2cibA 455 4.83e-64 2iagA 482 4.52e-63 2ij2A 470 3.43e-62 a.104.1.1 137449 2zbxA 412 6.48e-56 1izoA 417 6.30e-55 a.104.1.1 83851 3bdzA 397 1.41e-54 3bujA 397 1.54e-54 1z8oA 404 4.29e-54 a.104.1.1 124722 1gwiA 411 4.44e-54 a.104.1.1 76364 1q5dA 419 5.59e-54 a.104.1.1 95891 1t2bA 397 8.75e-54 1yrcA 414 9.48e-54 a.104.1.1 123917 2fr7A 412 2.19e-53 1jfbA 404 2.30e-53 a.104.1.1 66624 1uedA 406 3.23e-53 a.104.1.1 99256 1cpt 412 4.28e-53 1cptA 428 6.76e-53 a.104.1.1 18968 1n40A 396 3.22e-52 a.104.1.1 79977 1s1fA 406 4.15e-52 a.104.1.1 112008 1n97A 389 6.25e-52 a.104.1.1 80335 2z3tA 425 9.31e-52 2uuqA 414 9.87e-52 1odoA 408 1.41e-50 a.104.1.1 92783 1lfkA 398 3.19e-49 a.104.1.1 77926 2rfbA 343 2.34e-48 1io7A 368 2.21e-45 a.104.1.1 18971 2q83A 346 3.419 2hhcA 330 4.526 2dvtA 327 4.565 c.1.9.15 131793 2pq6A 482 7.715 1qqfA 277 7.852 a.102.4.4 18875 1dceB 331 10.14 a.102.4.3 18872 1cjcA 460 11.18 c.3.1.1,c.4.1.1 30319,30604 2qahA 303 11.48 2b61A 377 11.58 1umpA 631 14.30 a.102.4.2,a.102.4.2 99619,99620 2sqcA 631 14.57 a.102.4.2,a.102.4.2 18854,18855 1nd6A 354 15.01 c.60.1.2 80407 2q4uA 272 15.46 3bv0A 437 16.69 2scpA 174 18.49 a.39.1.5 17256 2nooA 502 18.67 2jg2A 422 19.01 2r44A 331 22.60 2di4A 238 23.56 a.269.1.1 131522 1qz9A 416 27.27 c.67.1.3 96621 1yb5A 351 29.96 b.35.1.2,c.2.1.1 116601,116602 3c3kA 285 31.04 2id3A 225 31.19 a.4.1.9,a.121.1.1 137261,137262 1w6kA 732 31.68 a.102.4.2,a.102.4.2 114271,114272 1tn6B 437 31.91 a.102.4.3 112528 2ffiA 288 32.32 c.1.9.15 133385 2r4vA 247 32.90 2hpsA 186 33.03 2qzvA 873 33.74 1cznA 169 34.80 c.23.5.1 31181 2b4uA 335 35.80 2iw1A 374 36.12 c.87.1.8 137738 2nsaA 170 36.95 1hzfA 367 37.06 a.102.4.4 76731 1ee4A 423 37.84 a.118.1.1 19128 2qk2A 242 38.03 1uhkA 191 39.66 a.39.1.5 119681 1sxjC 340 39.93 a.80.1.1,c.37.1.20 106085,106086 1jftA 340 40.37 a.35.1.5,c.93.1.1 66652,66653 1a9nB 96 42.66 d.58.7.1 39165 2basA 431 42.99 c.1.33.1,d.110.6.2 128244,128245 1t0fA 276 45.51 a.4.5.27,c.52.1.16 112195,112196 1w3wA 327 47.01 1vr5A 547 47.74 c.94.1.1 120437 2ct9A 208 47.93 2nx9A 464 48.99 1is1A 185 49.00 d.67.3.1 83704 3bjdA 332 49.03 3ccyA 203 50.67 1h7eA 245 52.49 c.68.1.13 60717 2of7A 260 53.74 2ioyA 283 53.97 2hpkA 208 54.56 2ie7A 318 55.53 a.65.1.1 137293 1wqgA 185 55.76 2qh5A 308 55.77 2i8aA 252 55.86 1qwjA 229 55.96 c.68.1.13 96478 3brqA 296 56.93 2zcmA 192 60.65 2q0xA 335 64.51 2d51A 406 64.95 1nw1A 429 65.27 d.144.1.8 86286 2ccmA 191 65.66 1w77A 228 68.00 c.68.1.13 120679 1ezwA 349 68.02 c.1.16.3 29558 2go9A 161 68.78 1lf6A 684 69.78 a.102.1.5,b.30.5.5 77918,77919 1jf9A 408 70.57 c.67.1.3 62931 3clqA 421 70.95 1gl6A 436 71.37 c.37.1.11 70259 2uxyA 341 72.49 2f9dA 125 73.17 d.58.7.1 133159 3cbuA 214 75.70 1iq8A 582 76.75 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2db0A 253 76.83 1yzxA 226 76.88 2i10A 202 78.42 a.4.1.9,a.121.1.1 136960,136961 2qt1A 207 80.25 1jt6A 188 80.51 a.4.1.9,a.121.1.1 67247,67248 2h6fB 437 81.12 a.102.4.3 136186 1a5tA 334 82.56 a.80.1.1,c.37.1.20 18450,32423 3c61A 314 82.94 1e8yA 966 83.10 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2prrA 197 84.41 2b9wA 424 84.87 1t5jA 313 86.02 a.209.1.1 99125 2e2rA 244 87.02 2gwdA 449 89.94