# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 2.29e-60 1r9oA 477 2.42e-60 a.104.1.1 104878 1tqnA 486 3.67e-60 a.104.1.1 107238 3c6gA 479 3.55e-59 1po5A 476 1.42e-58 a.104.1.1 94963 1x8vA 455 2.13e-58 a.104.1.1 114968 1h5zA 455 5.00e-58 a.104.1.1 90622 2hi4A 495 5.40e-58 1zo4A 473 5.85e-58 2ve3A 444 5.93e-58 3b98A 475 8.67e-58 3b6hA 498 1.36e-57 1jpzA 473 2.03e-57 a.104.1.1 67069 2cibA 455 4.42e-57 2iagA 482 2.90e-56 2ij2A 470 2.93e-56 a.104.1.1 137449 2zbxA 412 2.46e-50 1izoA 417 1.14e-49 a.104.1.1 83851 3bdzA 397 1.91e-49 1yrcA 414 2.77e-49 a.104.1.1 123917 3bujA 397 5.28e-49 1t2bA 397 8.40e-49 1z8oA 404 9.89e-49 a.104.1.1 124722 2fr7A 412 1.19e-48 1q5dA 419 1.28e-48 a.104.1.1 95891 1cpt 412 1.83e-48 1cptA 428 2.36e-48 a.104.1.1 18968 1gwiA 411 3.50e-48 a.104.1.1 76364 1jfbA 404 3.55e-48 a.104.1.1 66624 1uedA 406 1.27e-47 a.104.1.1 99256 1s1fA 406 1.95e-47 a.104.1.1 112008 1n97A 389 3.49e-47 a.104.1.1 80335 1n40A 396 6.48e-47 a.104.1.1 79977 1odoA 408 1.38e-46 a.104.1.1 92783 2z3tA 425 1.66e-46 2uuqA 414 2.22e-46 1lfkA 398 3.05e-44 a.104.1.1 77926 2rfbA 343 4.50e-44 1io7A 368 1.86e-41 a.104.1.1 18971 2hhcA 330 1.853 1nd6A 354 2.519 c.60.1.2 80407 2q83A 346 4.116 1gntA 553 5.354 e.26.1.1 70290 2ot3A 274 7.747 a.222.1.1 139311 1e7uA 961 11.32 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1cznA 169 11.74 c.23.5.1 31181 1pjrA 724 13.55 c.37.1.19,c.37.1.19 32391,32392 2r6oA 294 14.00 1t5oA 351 16.29 c.124.1.5 106459 2ckwA 515 17.21 2r4vA 247 18.08 2ovkC 159 19.62 1mdoA 393 21.49 c.67.1.4 79013 1qv1A 195 24.08 a.39.1.5 96347 1gc0A 398 25.50 c.67.1.3 70168 1b3uA 588 25.50 a.118.1.2 19135 1h6dA 433 27.07 c.2.1.3,d.81.1.5 65656,65657 1gnlA 544 28.75 e.26.1.1 70287 2hpkA 208 29.49 1khvA 516 34.19 e.8.1.4 68627 2qalC 232 34.21 1qopA 268 36.52 c.1.2.4 28570 1th0A 226 37.40 d.3.1.7 106903 2qt1A 207 37.95 2h1yA 321 38.55 3d1cA 369 39.73 1j6oA 268 39.74 c.1.9.12 77088 2vqeC 239 39.75 2qkoA 215 39.90 1h3nA 878 39.95 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1e8yA 966 41.98 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1lj5A 379 42.08 e.1.1.1 73928 1ep3A 311 42.57 c.1.4.1 28597 1h0hA 977 43.69 b.52.2.2,c.81.1.1 76435,76436 2fcr 173 43.72 3bjuA 521 44.61 3cmnA 372 44.99 1uhgA 385 45.11 e.1.1.1 88491 1l0wA 580 45.17 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1g8iA 190 45.92 a.39.1.5 60363 2o7cA 398 46.45 2cvbA 188 49.46 c.47.1.10 130859 1pvaA 110 49.51 a.39.1.4 17207 2fgeA 995 49.99 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 2cuyA 305 50.49 1oaaA 259 50.50 c.2.1.2 29829 2hraA 209 52.20 1nm2A 317 53.04 c.19.1.1,d.58.23.1 80654,80655 1tf1A 198 55.45 d.110.2.2 106826 2nsaA 170 56.07 1qhxA 178 56.41 c.37.1.3 31936 2b5tI 432 56.88 e.1.1.1 127905 1js3A 486 57.02 c.67.1.6 67215 1rwyA 109 57.87 a.39.1.4 98002 1i5nA 146 60.48 a.24.10.3 61805 1yp2A 451 62.99 b.81.1.4,c.68.1.6 123798,123799 2qsxA 218 64.83 2e6fA 314 64.87 2e1vA 454 65.99 2cw6A 298 66.78 1uhkA 191 67.37 a.39.1.5 119681 1v0jA 399 67.44 2go9A 161 67.85 1jubA 311 68.69 c.1.4.1 90908 1txuA 273 69.32 a.222.1.1 107439 2yzhA 171 69.56 1o4sA 389 70.34 c.67.1.1 86620 2ie4A 589 70.78 a.118.1.2 137291 1ywfA 296 71.15 c.45.1.5 124144 2ew2A 316 73.51 1pjr 724 75.50 1epuA 591 76.30 e.25.1.1 43358 1qwjA 229 77.00 c.68.1.13 96478 3grs 478 80.16 3c5iA 369 80.60 1a9nB 96 81.38 d.58.7.1 39165 1ezwA 349 81.61 c.1.16.3 29558 2v0hA 456 85.42 2cduA 452 87.33 1tn6B 437 88.67 a.102.4.3 112528 1vdkA 466 89.87 a.127.1.1 100561