# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3c6gA 479 5.90e-65 2fdvA 476 7.19e-65 1tqnA 486 9.12e-65 a.104.1.1 107238 1po5A 476 1.87e-64 a.104.1.1 94963 2hi4A 495 9.43e-64 1r9oA 477 1.37e-63 a.104.1.1 104878 3b6hA 498 3.58e-63 1x8vA 455 5.92e-63 a.104.1.1 114968 3b98A 475 7.01e-63 1zo4A 473 1.84e-62 1h5zA 455 2.40e-62 a.104.1.1 90622 1jpzA 473 2.44e-62 a.104.1.1 67069 2ve3A 444 5.29e-62 2cibA 455 3.13e-61 2iagA 482 1.77e-60 2ij2A 470 1.03e-59 a.104.1.1 137449 2zbxA 412 1.38e-53 1izoA 417 2.77e-53 a.104.1.1 83851 3bdzA 397 1.83e-52 1t2bA 397 2.09e-52 1z8oA 404 2.43e-52 a.104.1.1 124722 1yrcA 414 3.27e-52 a.104.1.1 123917 3bujA 397 3.35e-52 2fr7A 412 8.60e-52 1gwiA 411 1.01e-51 a.104.1.1 76364 1q5dA 419 1.03e-51 a.104.1.1 95891 1jfbA 404 2.61e-51 a.104.1.1 66624 1cpt 412 1.13e-50 1s1fA 406 1.39e-50 a.104.1.1 112008 1n40A 396 1.42e-50 a.104.1.1 79977 1uedA 406 1.43e-50 a.104.1.1 99256 1cptA 428 1.65e-50 a.104.1.1 18968 2z3tA 425 2.77e-50 2uuqA 414 4.53e-50 1n97A 389 6.99e-50 a.104.1.1 80335 1odoA 408 2.90e-49 a.104.1.1 92783 1lfkA 398 1.59e-46 a.104.1.1 77926 2rfbA 343 1.80e-46 1io7A 368 9.50e-45 a.104.1.1 18971 2pq6A 482 2.812 2hhcA 330 4.243 1rrvA 416 4.822 c.87.1.5 105083 2q83A 346 6.201 2dvtA 327 7.625 c.1.9.15 131793 1cjcA 460 8.821 c.3.1.1,c.4.1.1 30319,30604 2q4uA 272 10.37 1nd6A 354 12.90 c.60.1.2 80407 2qt1A 207 13.38 1w6kA 732 15.42 a.102.4.2,a.102.4.2 114271,114272 2basA 431 18.42 c.1.33.1,d.110.6.2 128244,128245 2hpkA 208 18.58 1tn6B 437 18.67 a.102.4.3 112528 1umpA 631 20.26 a.102.4.2,a.102.4.2 99619,99620 3bv0A 437 20.61 2b61A 377 21.75 2nooA 502 21.76 1vr5A 547 23.52 c.94.1.1 120437 1dqaA 467 23.87 d.58.20.1,d.179.1.1 39364,42585 2akzA 439 24.44 c.1.11.1,d.54.1.1 126944,126945 2scpA 174 26.14 a.39.1.5 17256 1jtvA 327 26.46 c.2.1.2 84230 1uhkA 191 27.55 a.39.1.5 119681 2qzvA 873 28.05 2ptzA 432 29.09 1cznA 169 29.16 c.23.5.1 31181 2r4vA 247 31.58 1i5nA 146 31.74 a.24.10.3 61805 1ee4A 423 32.27 a.118.1.1 19128 1oneA 436 32.85 c.1.11.1,d.54.1.1 29200,38844 2al1A 436 34.28 c.1.11.1,d.54.1.1 126949,126950 2f9dA 125 37.69 d.58.7.1 133159 2nwfA 141 37.99 1h7eA 245 40.49 c.68.1.13 60717 1dceB 331 41.47 a.102.4.3 18872 1y8cA 246 41.56 c.66.1.43 116563 2ie7A 318 41.82 a.65.1.1 137293 1qqfA 277 41.96 a.102.4.4 18875 1is1A 185 44.31 d.67.3.1 83704 2nx9A 464 44.40 2di4A 238 44.81 a.269.1.1 131522 1k0mA 241 45.26 a.45.1.1,c.47.1.5 67949,67950 2b9wA 424 45.56 3bjdA 332 48.65 2nsaA 170 49.01 1t0fA 276 50.15 a.4.5.27,c.52.1.16 112195,112196 2i5gA 325 50.76 2prrA 197 51.11 2ovkC 159 52.14 1iseA 185 53.54 d.67.3.1 90691 1mdoA 393 55.60 c.67.1.4 79013 2pbyA 308 56.14 1kwgA 645 56.34 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ezwA 349 56.98 c.1.16.3 29558 2go9A 161 57.81 2ckwA 515 59.22 2hpsA 186 59.49 1ep3A 311 61.86 c.1.4.1 28597 3caxA 369 62.20 1wqgA 185 63.36 1o7fA 469 63.93 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2b4uA 335 65.09 2ragA 417 66.28 1pjrA 724 66.60 c.37.1.19,c.37.1.19 32391,32392 1w3wA 327 67.10 2fq6A 415 69.23 c.67.1.3 133939 1wdcB 156 69.80 a.39.1.5 17302 1w7jB 151 70.69 a.39.1.5 120690 2al2A 436 71.08 c.1.11.1,d.54.1.1 126953,126954 1q6uA 245 71.98 d.26.1.1 95998 1dljA 402 72.82 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2ot3A 274 73.92 a.222.1.1 139311 2jg2A 422 74.46 1uqwA 509 74.68 c.94.1.1 99799 2p36A 335 74.83 1wa5B 530 74.88 a.118.1.1 114432 1v70A 105 75.51 b.82.1.9 113555 2i10A 202 75.75 a.4.1.9,a.121.1.1 136960,136961 1wy2A 351 77.65 3pmgA 561 78.38 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1t08A 519 78.48 a.118.1.1 112190 1qwjA 229 78.56 c.68.1.13 96478 1pvaA 110 79.35 a.39.1.4 17207 1oyzA 280 82.32 a.118.1.16 93775 1nstA 325 83.02 c.37.1.5 31951 2f62A 161 84.73 c.23.14.1 133021 1yzxA 226 85.23 3cbuA 214 85.34 1xngA 268 86.52 c.26.2.1 122186 1sxjE 354 87.24 a.80.1.1,c.37.1.20 106089,106090 3ce9A 354 87.64 1iow 306 87.92 1oaaA 259 88.87 c.2.1.2 29829 2nq5A 755 89.46