# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fdvA 476 8.53e-66 3c6gA 479 8.93e-66 1po5A 476 3.64e-65 a.104.1.1 94963 2hi4A 495 6.12e-65 1tqnA 486 3.24e-64 a.104.1.1 107238 1x8vA 455 3.80e-64 a.104.1.1 114968 1r9oA 477 3.80e-64 a.104.1.1 104878 1h5zA 455 5.40e-64 a.104.1.1 90622 3b6hA 498 9.27e-64 1zo4A 473 2.12e-63 3b98A 475 2.32e-63 1jpzA 473 3.22e-63 a.104.1.1 67069 2ve3A 444 1.05e-62 2cibA 455 3.79e-62 2iagA 482 4.03e-61 2ij2A 470 2.20e-60 a.104.1.1 137449 2zbxA 412 3.68e-54 1izoA 417 1.61e-53 a.104.1.1 83851 3bdzA 397 2.75e-53 1yrcA 414 3.00e-53 a.104.1.1 123917 2fr7A 412 3.64e-53 3bujA 397 4.22e-53 1t2bA 397 7.61e-53 1z8oA 404 1.40e-52 a.104.1.1 124722 1q5dA 419 2.40e-52 a.104.1.1 95891 1gwiA 411 4.78e-52 a.104.1.1 76364 1jfbA 404 1.18e-51 a.104.1.1 66624 2uuqA 414 3.31e-51 1s1fA 406 4.24e-51 a.104.1.1 112008 1uedA 406 4.63e-51 a.104.1.1 99256 1cpt 412 4.94e-51 1cptA 428 5.83e-51 a.104.1.1 18968 1n40A 396 7.28e-51 a.104.1.1 79977 2z3tA 425 1.12e-50 1n97A 389 5.42e-50 a.104.1.1 80335 1odoA 408 2.64e-49 a.104.1.1 92783 2rfbA 343 6.72e-47 1lfkA 398 9.25e-47 a.104.1.1 77926 1io7A 368 3.25e-45 a.104.1.1 18971 2nx9A 464 2.487 2pq6A 482 3.285 1umpA 631 4.301 a.102.4.2,a.102.4.2 99619,99620 1ohvA 472 5.477 c.67.1.4 93031 1w63A 618 6.425 i.23.1.1 109192 1nd6A 354 6.479 c.60.1.2 80407 1cjcA 460 7.000 c.3.1.1,c.4.1.1 30319,30604 1mdoA 393 7.116 c.67.1.4 79013 2q4uA 272 7.180 2i8aA 252 7.224 2hhcA 330 7.258 3bv0A 437 8.351 1rrvA 416 9.522 c.87.1.5 105083 2basA 431 9.635 c.1.33.1,d.110.6.2 128244,128245 2qt1A 207 10.29 2al1A 436 12.53 c.1.11.1,d.54.1.1 126949,126950 2ptzA 432 12.88 1tvlA 454 12.93 c.1.16.4 107366 2di4A 238 14.96 a.269.1.1 131522 1k1xA 659 15.27 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1lucB 324 16.11 c.1.16.1 29548 1t5jA 313 17.69 a.209.1.1 99125 1ti6A 875 17.86 b.52.2.2,c.81.1.1 106974,106975 2hs3A 603 18.05 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 1t0fA 276 18.11 a.4.5.27,c.52.1.16 112195,112196 1nhsA 447 18.51 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1cznA 169 22.21 c.23.5.1 31181 1d6mA 653 22.57 e.10.1.1 43248 1uhkA 191 22.73 a.39.1.5 119681 2hm7A 310 22.98 2hldD 478 23.78 1ee4A 423 24.21 a.118.1.1 19128 1ezwA 349 24.21 c.1.16.3 29558 4pgaA 337 25.24 c.88.1.1 35565 1hx0A 496 26.50 b.71.1.1,c.1.8.1 61346,61347 1dceB 331 27.43 a.102.4.3 18872 1is1A 185 28.58 d.67.3.1 83704 2hrdA 253 30.67 2akzA 439 31.10 c.1.11.1,d.54.1.1 126944,126945 1w6kA 732 33.14 a.102.4.2,a.102.4.2 114271,114272 1dljA 402 33.79 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 3d1cA 369 35.24 2i5gA 325 35.37 2dvtA 327 36.08 c.1.9.15 131793 1t08A 519 36.32 a.118.1.1 112190 2hpkA 208 36.43 2yzvA 303 37.01 2scpA 174 37.34 a.39.1.5 17256 2nsaA 170 37.91 2ot3A 274 38.28 a.222.1.1 139311 1kwgA 645 38.56 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ktbA 405 39.35 b.71.1.1,c.1.8.1 72960,72961 1k0mA 241 39.41 a.45.1.1,c.47.1.5 67949,67950 1i5nA 146 39.97 a.24.10.3 61805 2gwdA 449 40.26 1vliA 385 41.16 b.85.1.1,c.1.10.6 108830,108831 2p36A 335 41.24 1dqaA 467 41.83 d.58.20.1,d.179.1.1 39364,42585 1vr5A 547 42.34 c.94.1.1 120437 1qqfA 277 42.52 a.102.4.4 18875 2q83A 346 42.80 1wqgA 185 43.57 3bjdA 332 44.85 2i10A 202 45.59 a.4.1.9,a.121.1.1 136960,136961 1b3uA 588 46.35 a.118.1.2 19135 2ie7A 318 46.46 a.65.1.1 137293 1iseA 185 46.62 d.67.3.1 90691 1smdA 496 47.03 b.71.1.1,c.1.8.1 27768,28755 3pmgA 561 47.62 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2b9wA 424 47.96 1fc4A 401 47.98 c.67.1.4 59760 2bwvA 440 48.39 c.55.2.1,d.127.1.1 129387,129388 1e1oA 504 51.27 b.40.4.1,d.104.1.1 25258,40714 1jtvA 327 51.62 c.2.1.2 84230 3cbuA 214 52.30 1h7eA 245 52.98 c.68.1.13 60717 2fjuB 799 55.06 1vefA 395 55.55 c.67.1.4 120018 1wq3A 322 56.21 1qh8A 478 56.41 c.92.2.3 35633 1iow 306 56.89 1xfcA 384 58.15 3caxA 369 59.70 2cduA 452 60.59 3b40A 417 60.88 1iowA 306 61.16 c.30.1.2,d.142.1.1 31713,41481 1o7fA 469 62.48 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1ep3A 311 62.58 c.1.4.1 28597 2b81A 323 63.02 1yb5A 351 63.02 b.35.1.2,c.2.1.1 116601,116602 1zu0A 529 63.22 2qk2A 242 63.83 2himA 358 66.18 1tn6B 437 68.03 a.102.4.3 112528 1k92A 455 68.44 c.26.2.1,d.210.1.1 68325,68326 2prrA 197 69.13 1v4vA 376 72.51 c.87.1.3 100313 2gnoA 305 74.19 a.80.1.1,c.37.1.20 135414,135415 2cy8A 453 76.38 1w3wA 327 76.47 1rwtA 232 78.09 f.43.1.1 97992 1oaaA 259 78.11 c.2.1.2 29829 1xdiA 499 78.43 c.3.1.5,d.87.1.1 115160,115161 2ff4A 388 78.49 a.4.6.1,a.118.8.3,b.26.1.2 133367,133368,133369 2pb2A 420 80.29 1wa5B 530 80.44 a.118.1.1 114432 1pbyA 489 80.91 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1u8xX 472 81.74 c.2.1.5,d.162.1.2 107741,107742 1l9xA 315 84.66 c.23.16.1 73762 1sr9A 644 86.40 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2fcr 173 87.24 3b9oA 440 87.84 2go9A 161 88.96