# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3c6gA 479 2.09e-67 1tqnA 486 2.19e-67 a.104.1.1 107238 2fdvA 476 3.32e-67 1po5A 476 1.04e-66 a.104.1.1 94963 2hi4A 495 5.08e-66 1r9oA 477 8.30e-66 a.104.1.1 104878 1x8vA 455 1.74e-65 a.104.1.1 114968 3b6hA 498 2.27e-65 3b98A 475 4.35e-65 1zo4A 473 6.31e-65 1h5zA 455 6.65e-65 a.104.1.1 90622 1jpzA 473 9.45e-65 a.104.1.1 67069 2ve3A 444 2.55e-64 2cibA 455 1.29e-63 2iagA 482 1.70e-62 2ij2A 470 5.45e-62 a.104.1.1 137449 2zbxA 412 2.13e-55 1izoA 417 4.42e-55 a.104.1.1 83851 1t2bA 397 1.28e-54 3bdzA 397 1.61e-54 1yrcA 414 2.07e-54 a.104.1.1 123917 3bujA 397 3.05e-54 1z8oA 404 3.76e-54 a.104.1.1 124722 1q5dA 419 6.57e-54 a.104.1.1 95891 2fr7A 412 9.29e-54 1gwiA 411 9.91e-54 a.104.1.1 76364 1jfbA 404 5.73e-53 a.104.1.1 66624 1s1fA 406 1.72e-52 a.104.1.1 112008 1cpt 412 2.10e-52 1uedA 406 2.26e-52 a.104.1.1 99256 1n40A 396 2.45e-52 a.104.1.1 79977 2z3tA 425 2.70e-52 1cptA 428 4.14e-52 a.104.1.1 18968 2uuqA 414 6.30e-52 1n97A 389 1.07e-51 a.104.1.1 80335 1odoA 408 7.11e-51 a.104.1.1 92783 2rfbA 343 2.14e-48 1lfkA 398 4.09e-48 a.104.1.1 77926 1io7A 368 2.47e-46 a.104.1.1 18971 1cjcA 460 3.026 c.3.1.1,c.4.1.1 30319,30604 1rrvA 416 6.643 c.87.1.5 105083 2dvtA 327 6.893 c.1.9.15 131793 2pq6A 482 7.013 2hhcA 330 7.454 2q83A 346 10.89 2basA 431 12.61 c.1.33.1,d.110.6.2 128244,128245 3bv0A 437 12.70 2qt1A 207 16.37 1umpA 631 17.35 a.102.4.2,a.102.4.2 99619,99620 1vr5A 547 17.85 c.94.1.1 120437 1w6kA 732 20.00 a.102.4.2,a.102.4.2 114271,114272 1tn6B 437 20.05 a.102.4.3 112528 1nd6A 354 20.21 c.60.1.2 80407 1qqfA 277 21.21 a.102.4.4 18875 1cznA 169 21.75 c.23.5.1 31181 2nooA 502 22.77 2hpkA 208 23.18 1dqaA 467 27.31 d.58.20.1,d.179.1.1 39364,42585 2q4uA 272 28.77 1jtvA 327 30.02 c.2.1.2 84230 2qzvA 873 31.55 2b61A 377 31.85 1ee4A 423 32.42 a.118.1.1 19128 2r4vA 247 32.72 1uhkA 191 32.80 a.39.1.5 119681 1i5nA 146 33.42 a.24.10.3 61805 2go9A 161 36.01 2f9dA 125 36.54 d.58.7.1 133159 1k0mA 241 36.62 a.45.1.1,c.47.1.5 67949,67950 2nx9A 464 36.65 2e8yA 718 39.37 2b9wA 424 39.69 2nsaA 170 42.47 2akzA 439 42.70 c.1.11.1,d.54.1.1 126944,126945 2scpA 174 42.80 a.39.1.5 17256 1is1A 185 43.06 d.67.3.1 83704 1h7eA 245 45.05 c.68.1.13 60717 1oneA 436 45.64 c.1.11.1,d.54.1.1 29200,38844 2al1A 436 45.80 c.1.11.1,d.54.1.1 126949,126950 2ie7A 318 46.15 a.65.1.1 137293 2ragA 417 46.18 1t0fA 276 46.94 a.4.5.27,c.52.1.16 112195,112196 2prrA 197 47.38 1mdoA 393 48.31 c.67.1.4 79013 2di4A 238 48.93 a.269.1.1 131522 2qahA 303 49.02 2o7rA 338 49.82 2i5gA 325 51.91 1ezwA 349 52.70 c.1.16.3 29558 1iseA 185 53.61 d.67.3.1 90691 2fcr 173 54.52 1lucB 324 54.73 c.1.16.1 29548 2jg2A 422 55.14 1ep3A 311 55.56 c.1.4.1 28597 1q6uA 245 56.79 d.26.1.1 95998 1pjrA 724 61.48 c.37.1.19,c.37.1.19 32391,32392 1yb5A 351 61.84 b.35.1.2,c.2.1.1 116601,116602 2vqeC 239 64.90 1jf9A 408 65.07 c.67.1.3 62931 1sxjE 354 66.79 a.80.1.1,c.37.1.20 106089,106090 3bjdA 332 67.15 1w7jB 151 67.33 a.39.1.5 120690 3caxA 369 67.85 2p36A 335 68.09 2j0wA 449 68.12 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 1dljA 402 69.26 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dceB 331 70.74 a.102.4.3 18872 1iow 306 71.87 1t5jA 313 72.38 a.209.1.1 99125 2fq6A 415 73.13 c.67.1.3 133939 2ptzA 432 73.96 1uqwA 509 74.39 c.94.1.1 99799 1wqgA 185 75.87 1oaaA 259 76.94 c.2.1.2 29829 3ce9A 354 78.95 1l9xA 315 80.02 c.23.16.1 73762 2b4uA 335 80.13 2ixaA 444 80.60 2ovkC 159 81.00 1xu9A 286 81.41 c.2.1.2 116052 1wdcB 156 82.87 a.39.1.5 17302 3pmgA 561 84.60 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1t08A 519 85.11 a.118.1.1 112190 2i8aA 252 85.34 1xngA 268 86.12 c.26.2.1 122186 2hpsA 186 87.17 1kwgA 645 87.19 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2pbyA 308 88.33 1w3wA 327 89.45