# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 7.70e-73 a.104.1.1 107238 2fdvA 476 1.17e-72 1po5A 476 7.58e-72 a.104.1.1 94963 3c6gA 479 8.16e-72 2hi4A 495 1.50e-71 1x8vA 455 2.80e-71 a.104.1.1 114968 3b6hA 498 1.06e-70 1r9oA 477 1.07e-70 a.104.1.1 104878 1h5zA 455 3.04e-70 a.104.1.1 90622 3b98A 475 7.05e-70 2ve3A 444 1.01e-69 1jpzA 473 1.25e-69 a.104.1.1 67069 1zo4A 473 1.79e-69 2cibA 455 3.44e-69 2iagA 482 3.92e-67 2ij2A 470 9.70e-67 a.104.1.1 137449 2zbxA 412 7.14e-60 1izoA 417 1.19e-59 a.104.1.1 83851 3bdzA 397 2.49e-58 3bujA 397 2.74e-58 1q5dA 419 3.11e-58 a.104.1.1 95891 2fr7A 412 4.44e-58 1t2bA 397 9.00e-58 1z8oA 404 9.43e-58 a.104.1.1 124722 1gwiA 411 1.08e-57 a.104.1.1 76364 1jfbA 404 1.23e-57 a.104.1.1 66624 1yrcA 414 1.85e-57 a.104.1.1 123917 1cpt 412 3.44e-57 1cptA 428 5.50e-57 a.104.1.1 18968 1uedA 406 9.28e-57 a.104.1.1 99256 1n40A 396 2.51e-56 a.104.1.1 79977 1s1fA 406 3.65e-56 a.104.1.1 112008 2uuqA 414 5.33e-56 1n97A 389 5.98e-56 a.104.1.1 80335 2z3tA 425 3.46e-55 1odoA 408 5.92e-54 a.104.1.1 92783 1lfkA 398 3.05e-52 a.104.1.1 77926 2rfbA 343 6.21e-52 1io7A 368 8.74e-50 a.104.1.1 18971 2dvtA 327 1.143 c.1.9.15 131793 2hhcA 330 1.636 2qzvA 873 4.648 1t5jA 313 6.768 a.209.1.1 99125 2pq6A 482 7.809 1h7eA 245 8.093 c.68.1.13 60717 1k7iA 479 8.386 b.80.7.1,d.92.1.6 77281,77282 2q83A 346 8.397 1cjcA 460 8.509 c.3.1.1,c.4.1.1 30319,30604 1nd6A 354 9.853 c.60.1.2 80407 1cznA 169 17.26 c.23.5.1 31181 2qahA 303 17.85 1ep3A 311 18.69 c.1.4.1 28597 2basA 431 18.90 c.1.33.1,d.110.6.2 128244,128245 2q4uA 272 19.16 2nx9A 464 19.55 2jg2A 422 19.94 2nooA 502 21.53 2ixaA 444 23.48 2b4uA 335 26.20 2q0xA 335 28.14 1qqfA 277 29.10 a.102.4.4 18875 2qsxA 218 30.32 2scpA 174 33.90 a.39.1.5 17256 1lucA 355 34.09 c.1.16.1 29547 2qt1A 207 34.66 2b9wA 424 35.86 2r4vA 247 36.20 2f9dA 125 36.99 d.58.7.1 133159 1w6kA 732 37.69 a.102.4.2,a.102.4.2 114271,114272 2b61A 377 38.51 1xngA 268 39.08 c.26.2.1 122186 1yb5A 351 41.49 b.35.1.2,c.2.1.1 116601,116602 2i8aA 252 42.15 1is1A 185 42.43 d.67.3.1 83704 2go9A 161 43.44 1mpxA 615 45.03 b.18.1.13,c.69.1.21 85041,85042 1dqaA 467 45.63 d.58.20.1,d.179.1.1 39364,42585 1h0hA 977 46.13 b.52.2.2,c.81.1.1 76435,76436 1v0jA 399 47.35 2o7rA 338 49.65 3bv0A 437 51.00 2ggoA 401 51.49 2j7vA 298 52.29 1smdA 496 53.48 b.71.1.1,c.1.8.1 27768,28755 1wqgA 185 53.72 1rrvA 416 53.86 c.87.1.5 105083 3cbuA 214 53.88 2e5iA 124 53.89 1t0fA 276 54.15 a.4.5.27,c.52.1.16 112195,112196 1tn6B 437 55.26 a.102.4.3 112528 1uhkA 191 58.20 a.39.1.5 119681 1eg2A 319 59.46 c.66.1.11 34249 1bco 327 60.16 1pe1A 267 61.07 c.1.10.4 94591 1i5nA 146 61.16 a.24.10.3 61805 2fp3A 316 61.42 2hpkA 208 63.12 1ezwA 349 63.63 c.1.16.3 29558 1c4xA 285 64.10 c.69.1.10 34684 1h6dA 433 65.96 c.2.1.3,d.81.1.5 65656,65657 2db0A 253 66.31 1iseA 185 67.04 d.67.3.1 90691 2hldD 478 67.16 2prrA 197 68.10 1j1bA 420 68.64 d.144.1.7 90758 1umpA 631 69.77 a.102.4.2,a.102.4.2 99619,99620 1o7fA 469 69.88 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1qj4A 257 70.00 c.69.1.20 34796 1iq8A 582 70.58 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1rzuA 485 72.10 c.87.1.8 105140 1a9nB 96 72.25 d.58.7.1 39165 2bwvA 440 72.44 c.55.2.1,d.127.1.1 129387,129388 1k92A 455 72.68 c.26.2.1,d.210.1.1 68325,68326 1z02A 446 73.39 1khvA 516 74.73 e.8.1.4 68627 3d1cA 369 74.91 1vicA 262 75.65 c.68.1.13 100756 2uxyA 341 75.92 1pjrA 724 76.31 c.37.1.19,c.37.1.19 32391,32392 1sxjC 340 78.58 a.80.1.1,c.37.1.20 106085,106086 1ee4A 423 79.35 a.118.1.1 19128 2d51A 406 80.12 2nsaA 170 81.32 2cvbA 188 82.00 c.47.1.10 130859 2ie7A 318 82.99 a.65.1.1 137293 1k0mA 241 85.11 a.45.1.1,c.47.1.5 67949,67950 2rghA 571 85.25 2nq5A 755 85.82 1sxjA 511 86.03 a.80.1.1,c.37.1.20 106081,106082 3ceaA 346 87.14 2r3bA 310 89.47