# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 4.01e-67 a.104.1.1 107238 3c6gA 479 5.49e-67 2fdvA 476 7.41e-67 1po5A 476 1.49e-66 a.104.1.1 94963 2hi4A 495 1.77e-66 1r9oA 477 6.40e-66 a.104.1.1 104878 3b6hA 498 1.57e-65 1x8vA 455 2.09e-65 a.104.1.1 114968 3b98A 475 4.82e-65 1h5zA 455 1.22e-64 a.104.1.1 90622 2ve3A 444 1.31e-64 1jpzA 473 1.34e-64 a.104.1.1 67069 1zo4A 473 1.59e-64 2cibA 455 5.71e-64 2iagA 482 8.58e-63 2ij2A 470 2.57e-62 a.104.1.1 137449 2zbxA 412 1.85e-55 1izoA 417 3.59e-55 a.104.1.1 83851 3bdzA 397 7.52e-54 1q5dA 419 1.52e-53 a.104.1.1 95891 3bujA 397 1.63e-53 1gwiA 411 1.64e-53 a.104.1.1 76364 2fr7A 412 1.78e-53 1yrcA 414 1.87e-53 a.104.1.1 123917 1z8oA 404 2.12e-53 a.104.1.1 124722 1t2bA 397 2.32e-53 1jfbA 404 2.63e-53 a.104.1.1 66624 1cpt 412 7.21e-53 1cptA 428 8.70e-53 a.104.1.1 18968 1uedA 406 1.23e-52 a.104.1.1 99256 1n40A 396 3.60e-52 a.104.1.1 79977 1n97A 389 4.37e-52 a.104.1.1 80335 1s1fA 406 4.53e-52 a.104.1.1 112008 2uuqA 414 8.44e-52 2z3tA 425 1.56e-51 1odoA 408 1.69e-50 a.104.1.1 92783 2rfbA 343 2.50e-48 1lfkA 398 2.79e-48 a.104.1.1 77926 1io7A 368 7.34e-46 a.104.1.1 18971 2hhcA 330 1.532 2pq6A 482 2.169 2dvtA 327 2.432 c.1.9.15 131793 1nd6A 354 4.524 c.60.1.2 80407 1rrvA 416 5.907 c.87.1.5 105083 1t5jA 313 9.514 a.209.1.1 99125 1h7eA 245 9.741 c.68.1.13 60717 1w6kA 732 10.71 a.102.4.2,a.102.4.2 114271,114272 2basA 431 11.07 c.1.33.1,d.110.6.2 128244,128245 2q83A 346 14.34 2q4uA 272 16.19 1umpA 631 18.53 a.102.4.2,a.102.4.2 99619,99620 1cznA 169 21.18 c.23.5.1 31181 1ep3A 311 21.96 c.1.4.1 28597 2nx9A 464 22.48 2nooA 502 23.35 2jg2A 422 27.04 1tn6B 437 27.32 a.102.4.3 112528 2qzvA 873 27.34 1cjcA 460 27.61 c.3.1.1,c.4.1.1 30319,30604 2scpA 174 28.90 a.39.1.5 17256 1qqfA 277 29.52 a.102.4.4 18875 2f9dA 125 30.57 d.58.7.1 133159 1xngA 268 30.69 c.26.2.1 122186 2b61A 377 32.57 3bv0A 437 33.29 2r4vA 247 33.86 2is6A 680 35.54 1dceB 331 36.72 a.102.4.3 18872 1yb5A 351 39.76 b.35.1.2,c.2.1.1 116601,116602 1khvA 516 40.07 e.8.1.4 68627 1hzfA 367 40.81 a.102.4.4 76731 1lucA 355 40.98 c.1.16.1 29547 1h6dA 433 41.19 c.2.1.3,d.81.1.5 65656,65657 1i5nA 146 41.34 a.24.10.3 61805 2qt1A 207 41.83 2qsxA 218 42.28 1nt4A 391 42.33 c.60.1.2 92102 2hpkA 208 43.76 1uhkA 191 43.98 a.39.1.5 119681 2uxyA 341 44.51 1is1A 185 45.91 d.67.3.1 83704 2ie7A 318 48.52 a.65.1.1 137293 1a9nB 96 49.31 d.58.7.1 39165 2di4A 238 49.71 a.269.1.1 131522 2sqcA 631 50.49 a.102.4.2,a.102.4.2 18854,18855 1sxjA 511 51.71 a.80.1.1,c.37.1.20 106081,106082 1rzuA 485 51.93 c.87.1.8 105140 1v0jA 399 53.46 2go9A 161 54.54 1uc8A 280 54.63 c.30.1.6,d.142.1.7 99165,99166 3cbuA 214 57.18 1jtvA 327 59.26 c.2.1.2 84230 1k0mA 241 59.41 a.45.1.1,c.47.1.5 67949,67950 2oyoA 196 60.91 2prrA 197 61.01 1wqgA 185 64.58 2b9wA 424 65.68 1smdA 496 66.38 b.71.1.1,c.1.8.1 27768,28755 2qahA 303 66.46 1t0fA 276 66.76 a.4.5.27,c.52.1.16 112195,112196 2ot3A 274 68.40 a.222.1.1 139311 2qh5A 308 69.59 2ixaA 444 69.62 2ggoA 401 70.07 2f62A 161 71.19 c.23.14.1 133021 2ph7A 246 72.32 1h0hA 977 72.44 b.52.2.2,c.81.1.1 76435,76436 2nsaA 170 73.44 2db0A 253 73.47 1pvaA 110 73.87 a.39.1.4 17207 1pe1A 267 74.38 c.1.10.4 94591 3caiA 406 75.94 1pjrA 724 77.10 c.37.1.19,c.37.1.19 32391,32392 1r5lA 262 77.64 a.5.3.1,c.13.1.1 97099,97100 1ee4A 423 78.20 a.118.1.1 19128 1dqaA 467 78.47 d.58.20.1,d.179.1.1 39364,42585 1w3wA 327 78.66 2fcr 173 82.01 2efeA 267 82.73 1k04A 162 82.80 a.24.14.1 67904 2cvbA 188 84.11 c.47.1.10 130859 1yzxA 226 86.73 2ragA 417 87.09 1c4xA 285 88.09 c.69.1.10 34684 1vicA 262 88.16 c.68.1.13 100756 2f7tA 227 88.21