# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tqnA 486 8.93e-69 a.104.1.1 107238 3c6gA 479 5.12e-68 2fdvA 476 5.46e-68 1po5A 476 7.09e-68 a.104.1.1 94963 2hi4A 495 2.81e-67 1r9oA 477 4.25e-67 a.104.1.1 104878 1x8vA 455 6.90e-67 a.104.1.1 114968 3b6hA 498 2.11e-66 1h5zA 455 3.39e-66 a.104.1.1 90622 2ve3A 444 7.04e-66 3b98A 475 7.14e-66 1jpzA 473 8.19e-66 a.104.1.1 67069 1zo4A 473 1.00e-65 2cibA 455 3.12e-65 2iagA 482 8.26e-64 2ij2A 470 2.20e-63 a.104.1.1 137449 2zbxA 412 2.07e-56 1izoA 417 2.97e-56 a.104.1.1 83851 3bdzA 397 1.59e-55 3bujA 397 2.55e-55 2fr7A 412 7.24e-55 1t2bA 397 8.33e-55 1q5dA 419 1.17e-54 a.104.1.1 95891 1yrcA 414 1.20e-54 a.104.1.1 123917 1jfbA 404 1.27e-54 a.104.1.1 66624 1z8oA 404 1.56e-54 a.104.1.1 124722 1gwiA 411 2.02e-54 a.104.1.1 76364 1cpt 412 4.34e-54 1cptA 428 4.65e-54 a.104.1.1 18968 1uedA 406 7.30e-54 a.104.1.1 99256 1n97A 389 2.77e-53 a.104.1.1 80335 1s1fA 406 5.36e-53 a.104.1.1 112008 1n40A 396 5.61e-53 a.104.1.1 79977 2uuqA 414 1.05e-52 2z3tA 425 2.19e-52 1odoA 408 1.99e-51 a.104.1.1 92783 1lfkA 398 1.67e-49 a.104.1.1 77926 2rfbA 343 3.42e-49 1io7A 368 3.69e-47 a.104.1.1 18971 2dvtA 327 1.765 c.1.9.15 131793 2pq6A 482 3.117 2hhcA 330 3.364 2q83A 346 4.598 1nd6A 354 5.446 c.60.1.2 80407 1rrvA 416 10.05 c.87.1.5 105083 1cznA 169 11.30 c.23.5.1 31181 1t5jA 313 12.70 a.209.1.1 99125 2qzvA 873 14.43 2jg2A 422 14.84 2nooA 502 17.01 2basA 431 17.40 c.1.33.1,d.110.6.2 128244,128245 1tn6B 437 20.35 a.102.4.3 112528 1h7eA 245 21.95 c.68.1.13 60717 2ggoA 401 23.40 1cjcA 460 25.34 c.3.1.1,c.4.1.1 30319,30604 2q4uA 272 25.49 3bv0A 437 25.54 2qahA 303 26.75 1ep3A 311 26.82 c.1.4.1 28597 2scpA 174 28.61 a.39.1.5 17256 1umpA 631 28.90 a.102.4.2,a.102.4.2 99619,99620 2nx9A 464 29.42 2ffiA 288 29.96 c.1.9.15 133385 1qqfA 277 32.18 a.102.4.4 18875 2qsxA 218 32.63 2r4vA 247 33.40 2go9A 161 34.65 1pe1A 267 34.90 c.1.10.4 94591 1w6kA 732 36.91 a.102.4.2,a.102.4.2 114271,114272 2b61A 377 36.95 2f9dA 125 37.03 d.58.7.1 133159 1a9nB 96 37.46 d.58.7.1 39165 2nsaA 170 39.29 1dceB 331 40.76 a.102.4.3 18872 2qh5A 308 41.20 2i8aA 252 41.53 1khvA 516 41.59 e.8.1.4 68627 1yb5A 351 42.38 b.35.1.2,c.2.1.1 116601,116602 1i5nA 146 43.12 a.24.10.3 61805 1is1A 185 44.06 d.67.3.1 83704 2fr1A 486 44.51 c.2.1.2,c.2.1.2 133961,133962 2e5iA 124 46.02 1xngA 268 46.50 c.26.2.1 122186 3cbuA 214 46.91 1vr5A 547 48.92 c.94.1.1 120437 2hpkA 208 49.92 2fp3A 316 49.95 1z7aA 308 51.30 c.6.2.6 124591 1v0jA 399 54.05 2cvbA 188 54.69 c.47.1.10 130859 2f62A 161 56.34 c.23.14.1 133021 2qt1A 207 56.62 1h6dA 433 56.92 c.2.1.3,d.81.1.5 65656,65657 2b9wA 424 57.80 1dqaA 467 60.30 d.58.20.1,d.179.1.1 39364,42585 1bco 327 61.34 1nu4A 97 61.93 d.58.7.1 80731 1uhkA 191 63.01 a.39.1.5 119681 1r5lA 262 65.61 a.5.3.1,c.13.1.1 97099,97100 2sqcA 631 67.44 a.102.4.2,a.102.4.2 18854,18855 2fcr 173 67.75 3pmgA 561 68.28 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1a7jA 290 68.62 c.37.1.6 31952 1wy2A 351 68.98 2ve7C 250 69.31 1sxjE 354 69.60 a.80.1.1,c.37.1.20 106089,106090 1lucA 355 69.74 c.1.16.1 29547 1nt4A 391 70.88 c.60.1.2 92102 2db0A 253 71.37 2rghA 571 71.53 2ixaA 444 72.16 2di4A 238 73.56 a.269.1.1 131522 1yzxA 226 75.57 2iw1A 374 75.68 c.87.1.8 137738 2ragA 417 76.74 1uqwA 509 76.84 c.94.1.1 99799 1t0fA 276 76.85 a.4.5.27,c.52.1.16 112195,112196 2f7tA 227 77.29 1w77A 228 77.80 c.68.1.13 120679 1smdA 496 78.63 b.71.1.1,c.1.8.1 27768,28755 2gwdA 449 79.15 2nq5A 755 79.33 1w3wA 327 79.42 1wqgA 185 81.64 2yzvA 303 82.24 1pjrA 724 83.24 c.37.1.19,c.37.1.19 32391,32392 1kwgA 645 83.35 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1k0mA 241 83.48 a.45.1.1,c.47.1.5 67949,67950 1w7jB 151 83.82 a.39.1.5 120690 1hzfA 367 84.01 a.102.4.4 76731 1o7fA 469 84.15 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1jtvA 327 88.67 c.2.1.2 84230 1y8cA 246 89.56 c.66.1.43 116563